Research graph
References from Evaluation of zero counts to better understand the discrepancies between bulk and single-cell RNA-Seq platforms. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/nrg.2016.10
10.1038/nrg.2016.10 · External reference
10.1038/s41467-020-18158-5
10.1038/s41467-020-18158-5 · External reference
Single-cell transcriptomics: current methods and challenges in data acquisition and analysis
10.3389/fnins.2021.591122 · 2021 · External reference
10.1038/s41587-020-0465-8
10.1038/s41587-020-0465-8 · External reference
10.1038/ncomms14049
10.1038/ncomms14049 · External reference
10.1038/nbt.3102
10.1038/nbt.3102 · External reference
10.1038/s41587-020-0469-4
10.1038/s41587-020-0469-4 · External reference
10.1016/j.molcel.2017.01.023
10.1016/j.molcel.2017.01.023 · External reference
Statistics or biology: the zero-inflation controversy about scRNA-seq data
10.1186/s13059-022-02601-5 · 2022 · External reference
10.1038/s41467-021-27729-z
10.1038/s41467-021-27729-z · External reference
Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data
2022 · External reference
10.1016/j.ymeth.2022.06.010
10.1016/j.ymeth.2022.06.010 · External reference
10.1016/j.csbj.2020.09.014
10.1016/j.csbj.2020.09.014 · External reference
Sources of high variance between probe signals in affymetrix short oligonucleotide microarrays
10.3390/s140100532 · 2013 · External reference
Modeling zero inflation is not necessary for spatial transcriptomics
10.1186/s13059-022-02684-0 · 2022 · External reference
10.1038/s41587-019-0379-5
10.1038/s41587-019-0379-5 · External reference
Multi-omics investigation of innate navitoclax resistance in triple-negative breast cancer cells
10.3390/cancers12092551 · 2020 · External reference
UMI-count modeling and differential expression analysis for single-cell RNA sequencing
10.1186/s13059-018-1438-9 · 2018 · External reference
10.1093/nar/gkz826
10.1093/nar/gkz826 · External reference
Human bone marrow assessment by single-cell RNA sequencing, mass cytometry, and flow cytometry
10.1172/jci.insight.124928 · 2018 · External reference
10.1016/j.celrep.2018.11.086
10.1016/j.celrep.2018.11.086 · External reference
10.1093/bioinformatics/btp616
10.1093/bioinformatics/btp616 · External reference
Visualizing data using t-SNE
2008 · External reference
BatchI: batch effect identification in high-throughput screening data using a dynamic programming algorithm
10.1093/bioinformatics/bty900 · 2019 · External reference
GaMRed—Adaptive filtering of high-throughput biological data
10.1109/tcbb.2018.2858825 · 2020 · External reference
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
2019 · External reference
10.1093/nar/gkx1098
10.1093/nar/gkx1098 · External reference
Umap and Bismap: quantifying genome and methylome mappability
2018 · External reference
Measure transcript integrity using RNA-seq data
10.1186/s12859-016-0922-z · 2016 · External reference
10.18637/jss.v028.i05
10.18637/jss.v028.i05 · External reference
10.1038/s41590-018-0276-y
10.1038/s41590-018-0276-y · External reference
An expression atlas of human primary cells: inference of gene function from coexpression networks
10.1186/1471-2164-14-632 · 2013 · External reference
Dose-Response analysis using R
10.1371/journal.pone.0146021 · 2016 · External reference
10.1073/pnas.0506580102
10.1073/pnas.0506580102 · External reference
10.1093/nar/gkw1092
10.1093/nar/gkw1092 · External reference
Fast gene set enrichment analysis
2019 · External reference
10.1186/s13059-014-0550-8
10.1186/s13059-014-0550-8 · External reference
Recent Advances: molecular mechanism of RNA oxidation and its role in various diseases
2020 · External reference
10.1016/j.cellsig.2013.03.026
10.1016/j.cellsig.2013.03.026 · External reference
Venetoclax‐based salvage therapy for adult patients with relapsed/refractory acute lymphoblastic leukemia
2023 · External reference
10.1158/1535-7163.mct-22-0301
10.1158/1535-7163.mct-22-0301 · External reference
10.1002/ijc.29726
10.1002/ijc.29726 · External reference
10.1111/ajt.17154
10.1111/ajt.17154 · External reference
BCL2/BCL-XL inhibition induces apoptosis disrupts cellular calcium homeostasis and prevents platelet activation
2011 · External reference
The role of apoptosis repressor with a CARD domain (ARC) in the therapeutic resistance of renal cell carcinoma (RCC): the crucial role of ARC in the inhibition of extrinsic and intrinsic apoptotic signalling
10.1186/s12964-017-0170-5 · 2017 · External reference
PMCA2 silencing potentiates MDA-MB-231 breast cancer cell death initiated with the Bcl-2 inhibitor ABT-263
10.1016/j.bbrc.2016.09.030 · 2016 · External reference
10.1371/journal.pone.0120531
10.1371/journal.pone.0120531 · External reference
10.1074/jbc.m113.518134
10.1074/jbc.m113.518134 · External reference
10.1016/j.tibs.2014.06.005
10.1016/j.tibs.2014.06.005 · External reference
Fatty acid synthase (FASN) regulates the mitochondrial priming of cancer cells
10.1038/s41419-021-04262-x · 2021 · External reference
Polyphenols as mitochondria-targeted anticancer drugs
10.1016/j.canlet.2015.07.004 · 2015 · External reference
Effect of rifampin on the pharmacokinetics, safety and tolerability of navitoclax (ABT‐263), a dual inhibitor of Bcl‐2 and Bcl‐XL, in patients with cancer
10.1111/jcpt.12193 · 2014 · External reference
10.1158/2767-9764.crc-21-0105
10.1158/2767-9764.crc-21-0105 · External reference
10.1002/jcb.24943
10.1002/jcb.24943 · External reference
Targeting sphingosine kinase 2 suppresses cell growth and synergizes with BCL2/BCL-XL inhibitors through NOXA-mediated MCL1 degradation in cholangiocarcinoma
2019 · External reference
