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References from SCALA: A complete solution for multimodal analysis of single-cell Next Generation Sequencing data. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1007/978-1-0716-1307-8_19
10.1007/978-1-0716-1307-8_19 · External reference
10.1186/s13046-021-01955-1
10.1186/s13046-021-01955-1 · External reference
10.1038/s41596-020-00409-w
10.1038/s41596-020-00409-w · External reference
10.15698/mic2021.09.759
10.15698/mic2021.09.759 · External reference
Current best practices in single‐cell RNA‐seq analysis: a tutorial
10.15252/msb.20188746 · 2019 · External reference
10.1038/nmeth.1315
10.1038/nmeth.1315 · External reference
10.1073/pnas.1602306113
10.1073/pnas.1602306113 · External reference
10.1038/nmeth.2639
10.1038/nmeth.2639 · External reference
10.1016/j.cell.2015.05.002
10.1016/j.cell.2015.05.002 · External reference
10.1038/ncomms14049
10.1038/ncomms14049 · External reference
10.1038/s41592-022-01409-2
10.1038/s41592-022-01409-2 · External reference
10.7554/elife.27041
10.7554/elife.27041 · External reference
Unresolved reference
External reference
10.3389/fgene.2019.00317
10.3389/fgene.2019.00317 · External reference
10.1038/s41586-021-04262-z
10.1038/s41586-021-04262-z · External reference
10.1016/j.cell.2021.10.024
10.1016/j.cell.2021.10.024 · External reference
10.1371/journal.pcbi.1006245
10.1371/journal.pcbi.1006245 · External reference
10.1016/j.cell.2021.04.048
10.1016/j.cell.2021.04.048 · External reference
10.1186/s13059-017-1382-0
10.1186/s13059-017-1382-0 · External reference
10.1038/nbt.2859
10.1038/nbt.2859 · External reference
10.1038/nmeth.4402
10.1038/nmeth.4402 · External reference
10.1016/j.molcel.2018.06.044
10.1016/j.molcel.2018.06.044 · External reference
10.1038/s41592-021-01282-5
10.1038/s41592-021-01282-5 · External reference
10.1038/s41467-021-25131-3
10.1038/s41467-021-25131-3 · External reference
10.1038/nmeth.4463
10.1038/nmeth.4463 · External reference
10.1038/s41592-019-0367-1
10.1038/s41592-019-0367-1 · External reference
10.1038/s41588-021-00790-6
10.1038/s41588-021-00790-6 · External reference
10.1016/j.cell.2018.05.057
10.1016/j.cell.2018.05.057 · External reference
Unresolved reference
External reference
10.1093/bioinformatics/btz877
10.1093/bioinformatics/btz877 · External reference
10.1158/2159-8290.cd-21-0369
10.1158/2159-8290.cd-21-0369 · External reference
Unresolved reference
External reference
10.1186/s12859-020-03577-4
10.1186/s12859-020-03577-4 · External reference
10.1093/nar/gkz369
10.1093/nar/gkz369 · External reference
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
10.1186/s12864-018-4772-0 · 2018 · External reference
10.1093/bioadv/vbac016
10.1093/bioadv/vbac016 · External reference
Unresolved reference
External reference
10.1038/s41592-019-0667-5
10.1038/s41592-019-0667-5 · External reference
10.1088/1742-5468/2008/10/p10008
10.1088/1742-5468/2008/10/p10008 · External reference
10.1038/nbt.4314
10.1038/nbt.4314 · External reference
Unresolved reference
External reference
10.1093/bioinformatics/btv325
10.1093/bioinformatics/btv325 · External reference
10.1038/s41587-019-0395-5
10.1038/s41587-019-0395-5 · External reference
10.1093/bioinformatics/bts714
10.1093/bioinformatics/bts714 · External reference
10.1186/s13059-015-0844-5
10.1186/s13059-015-0844-5 · External reference
10.1016/j.cels.2019.03.003
10.1016/j.cels.2019.03.003 · External reference
10.1101/2021.06.02.446692
10.1101/2021.06.02.446692 · External reference
CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments
10.1186/s12859-020-3538-2 · 2020 · External reference
10.1101/2021.08.27.457747
10.1101/2021.08.27.457747 · External reference
10.1002/j.1460-2075.1991.tb04978.x
10.1002/j.1460-2075.1991.tb04978.x · External reference
10.1136/annrheumdis-2014-207137
10.1136/annrheumdis-2014-207137 · External reference
Unresolved reference
External reference
10.1038/s41586-021-03549-5
10.1038/s41586-021-03549-5 · External reference
10.1038/s41587-020-0591-3
10.1038/s41587-020-0591-3 · External reference
10.1038/s41592-021-01346-6
10.1038/s41592-021-01346-6 · External reference
10.1016/j.cell.2018.05.061
10.1016/j.cell.2018.05.061 · External reference
10.1186/gb-2008-9-9-r137
10.1186/gb-2008-9-9-r137 · External reference
Unresolved reference
External reference
10.3389/fbinf.2022.793309
10.3389/fbinf.2022.793309 · External reference
10.7717/peerj.10469
10.7717/peerj.10469 · External reference
10.1093/bioinformatics/bty517
10.1093/bioinformatics/bty517 · External reference
10.1093/nar/gkac322
10.1093/nar/gkac322 · External reference
10.1089/cmb.2021.0051
10.1089/cmb.2021.0051 · External reference
10.1093/bioinformatics/btaa269
10.1093/bioinformatics/btaa269 · External reference
10.1186/s12864-021-07469-6
10.1186/s12864-021-07469-6 · External reference
10.1186/1471-2164-12-507
10.1186/1471-2164-12-507 · External reference
10.1186/s12859-021-04472-2
10.1186/s12859-021-04472-2 · External reference
An accessible, interactive genepattern notebook for analysis and exploration of single-cell transcriptomic data
2019 · External reference
10.1186/s12859-017-1994-0
10.1186/s12859-017-1994-0 · External reference
