Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Research graph
References from Identification of over ten thousand candidate structured RNAs in viruses and phages. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1093/nar/gkx699
10.1093/nar/gkx699 · External reference
Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes
10.1186/s13059-021-02319-w · 2021 · External reference
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
10.1186/gb-2010-11-3-r31 · 2010 · External reference
10.1080/15476286.2022.2067714
10.1080/15476286.2022.2067714 · External reference
10.1093/bioinformatics/btaa080
10.1093/bioinformatics/btaa080 · External reference
Bacteriophages as sources of small non-coding RNA molecules
10.1016/j.plasmid.2020.102527 · 2021 · External reference
10.1038/ismej.2010.43
10.1038/ismej.2010.43 · External reference
RNA-Sequencing reveals the progression of phage-host interactions between φR1-37 and Yersinia enterocolitica
10.3390/v8040111 · 2016 · External reference
Novel mechanism of Escherichia coli porin regulation
10.1128/jb.188.2.576-586.2006 · 2006 · External reference
Cross-regulation between bacteria and phages at a posttranscriptional level
10.1128/9781683670247.ch29 · 2018 · External reference
10.1080/21597081.2016.1219441
10.1080/21597081.2016.1219441 · External reference
10.1126/science.1250691
10.1126/science.1250691 · External reference
10.1111/mmi.13419
10.1111/mmi.13419 · External reference
Non-canonical translation in plant RNA viruses
10.3389/fpls.2017.00494 · 2017 · External reference
10.1099/vir.0.042499-0
10.1099/vir.0.042499-0 · External reference
Naturally occurring tRNAs with non-canonical structures
10.3389/fmicb.2020.596914 · 2020 · External reference
10.1093/nar/gkaa946
10.1093/nar/gkaa946 · External reference
10.1016/j.cell.2019.03.040
10.1016/j.cell.2019.03.040 · External reference
10.1016/j.chom.2020.08.003
10.1016/j.chom.2020.08.003 · External reference
10.1038/nprot.2017.063
10.1038/nprot.2017.063 · External reference
10.1038/s41564-019-0510-x
10.1038/s41564-019-0510-x · External reference
10.1038/s41586-020-1957-x
10.1038/s41586-020-1957-x · External reference
Diversity, evolution, and classification of virophages uncovered through global metagenomics
10.1186/s40168-019-0768-5 · 2019 · External reference
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
2021 · External reference
10.1101/2020.05.24.111179
10.1101/2020.05.24.111179 · External reference
Draft genome sequence of Mn(II)-oxidizing bacterium sp. strain AB_14
10.1128/mra.01024-19 · 2019 · External reference
Soil microbes trade-off biogeochemical cycling for stress tolerance traits in response to year-round climate change
10.3389/fmicb.2020.00616 · 2020 · External reference
Differential effects of press vs. pulse seawater intrusion on microbial communities of a tidal freshwater marsh
2020 · External reference
10.1007/s00248-017-1028-5
10.1007/s00248-017-1028-5 · External reference
Virus variation resource - improved response to emergent viral outbreaks
10.1093/nar/gkw1065 · 2017 · External reference
10.1038/s41564-020-0755-4
10.1038/s41564-020-0755-4 · External reference
10.1126/sciadv.aay5981
10.1126/sciadv.aay5981 · External reference
High speed BLASTN: an accelerated MegaBLAST search tool
10.1093/nar/gkv784 · 2015 · External reference
10.1093/bioinformatics/bts429
10.1093/bioinformatics/bts429 · External reference
10.1093/bioinformatics/btt509
10.1093/bioinformatics/btt509 · External reference
10.1093/nar/gkaa1047
10.1093/nar/gkaa1047 · External reference
10.1101/2022.02.15.480533
10.1101/2022.02.15.480533 · External reference
BLAST: at the core of a powerful and diverse set of sequence analysis tools
10.1093/nar/gkh435 · 2004 · External reference
10.1261/rna.2536111
10.1261/rna.2536111 · External reference
Dinucleotide controlled null models for comparative RNA gene prediction
10.1186/1471-2105-9-248 · 2008 · External reference
MetaRibo-Seq measures translation in microbiomes
10.1038/s41467-020-17081-z · 2020 · External reference
10.1038/s41596-021-00592-4
10.1038/s41596-021-00592-4 · External reference
10.1093/nar/gkh152
10.1093/nar/gkh152 · External reference
10.1093/bioinformatics/btu153
10.1093/bioinformatics/btu153 · External reference
CDD: a conserved domain database for protein classification
10.1093/nar/gki069 · 2004 · External reference
RNIE: genome-wide prediction of bacterial intrinsic terminators
10.1093/nar/gkr168 · 2011 · External reference
Coordinate regulation of the expression of SdsR toxin and its downstream pphA gene by RyeA antitoxin in Escherichia coli
10.1038/s41598-019-45998-z · 2019 · External reference
10.1038/nrmicro1704
10.1038/nrmicro1704 · External reference
Post-transcriptional control by bacteriophage T4: mRNA decay and inhibition of translation initiation
10.1186/1743-422x-7-360 · 2010 · External reference
A role for mRNA secondary structure in the control of translation initiation
10.1038/295616a0 · 1982 · External reference
Using in-cell SHAPE-Seq and simulations to probe structure-function design principles of RNA transcriptional regulators
10.1261/rna.054916.115 · 2016 · External reference
Structured RNA contaminants in bacterial Ribo-Seq
10.1128/msphere.00855-20 · 2020 · External reference
BEDTools: a flexible suite of utilities for comparing genomic features
10.1093/bioinformatics/btq033 · 2010 · External reference
R2R--software to speed the depiction of aesthetic consensus RNA secondary structures
10.1186/1471-2105-12-3 · 2011 · External reference
10.1093/bioinformatics/btm404
10.1093/bioinformatics/btm404 · External reference
10.1038/ncomms11257
10.1038/ncomms11257 · External reference
10.1186/gb-2009-10-3-r25
10.1186/gb-2009-10-3-r25 · External reference
10.1038/nbt.1754
10.1038/nbt.1754 · External reference