Research graph
References from SelenzymeRF: updated enzyme suggestion software for unbalanced biochemical reactions. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/j.ymben.2020.11.012
10.1016/j.ymben.2020.11.012 · External reference
Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers
10.1016/j.ymben.2020.04.008 · 2020 · External reference
Biotechnological application of Streptomyces for the production of clinical drugs and other bioactive molecules
10.1016/j.copbio.2022.102762 · 2022 · External reference
Engineered Microbial Systems for the Production of Fuels and Industrially Important Chemicals
2023 · External reference
10.1039/d0cs00155d
10.1039/d0cs00155d · External reference
10.1016/j.copbio.2020.02.010
10.1016/j.copbio.2020.02.010 · External reference
Metabolic engineering of Saccharomyces cerevisiae for rosmarinic acid production
10.1021/acssynbio.0c00048 · 2020 · External reference
10.1016/j.ymben.2019.12.007
10.1016/j.ymben.2019.12.007 · External reference
Engineering the oleaginous yeast Yarrowia lipolytica for high-level resveratrol production
10.1016/j.ymben.2020.08.009 · 2020 · External reference
Engineering Escherichia coli towards de novo production of gatekeeper (2S)-flavanones: naringenin, pinocembrin, eriodictyol and homoeriodictyol
10.1093/synbio/ysaa012 · 2020 · External reference
10.1016/j.ymben.2017.12.002
10.1016/j.ymben.2017.12.002 · External reference
Design of computational retrobiosynthesis tools for the design of de novo synthetic pathways
10.1016/j.cbpa.2015.06.025 · 2015 · External reference
Updated ATLAS of biochemistry with new metabolites and improved enzyme prediction power
10.1021/acssynbio.0c00052 · 2020 · External reference
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics
10.1186/s13321-015-0087-1 · 2015 · External reference
MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind
10.1093/nar/gkw342 · 2016 · External reference
novoPathFinder: a webserver of designing novel-pathway with integrating GEM-model
10.1093/nar/gkaa230 · 2020 · External reference
Enzyme annotation for orphan reactions and its applications in biomanufacturing
10.1016/j.gce.2022.10.003 · 2022 · External reference
PathPred: an enzyme-catalyzed metabolic pathway prediction server
10.1093/nar/gkq318 · 2010 · External reference
10.1038/s41929-022-00909-w
10.1038/s41929-022-00909-w · External reference
Selenzyme: enzyme selection tool for pathway design
10.1093/bioinformatics/bty065 · 2018 · External reference
Unresolved reference
External reference
10.1093/nar/gki370
10.1093/nar/gki370 · External reference
10.1101/2021.09.09.459461
10.1101/2021.09.09.459461 · External reference
Unresolved reference
2012 · External reference
Discovery of novel chemical reactions by deep generative recurrent neural network
10.1038/s41598-021-81889-y · 2021 · External reference
RxnSim: a tool to compare biochemical reactions
10.1093/bioinformatics/btv416 · 2015 · External reference
10.1038/nmeth.2803
10.1038/nmeth.2803 · External reference
10.1021/jm0582165
10.1021/jm0582165 · External reference
10.1073/pnas.1818877116
10.1073/pnas.1818877116 · External reference
E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs
10.1093/bioinformatics/btp223 · 2009 · External reference
10.1126/sciadv.abe4166
10.1126/sciadv.abe4166 · External reference
Atom‐to‐atom mapping: a benchmarking study of popular mapping algorithms and consensus strategies
10.1002/minf.202100138 · 2022 · External reference
10.1093/nar/gkaa992
10.1093/nar/gkaa992 · External reference
10.1093/nar/gkaa1025
10.1093/nar/gkaa1025 · External reference
10.1093/nar/28.1.304
10.1093/nar/28.1.304 · External reference
Unresolved reference
2003 · External reference
One molecular fingerprint to rule them all: drugs, biomolecules, and the metabolome
10.1186/s13321-020-00445-4 · 2020 · External reference
Chemical topic modeling: Exploring molecular data sets using a common text-mining approach
10.1021/acs.jcim.7b00249 · 2017 · External reference
Influence of Normalization Techniques on Multi-criteria Decision-making Methods
2022 · External reference
Why is Tanimoto index an appropriate choice for fingerprint-based similarity calculations?
10.1186/s13321-015-0069-3 · 2015 · External reference
BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree
2020 · External reference
10.1093/nar/28.1.27
10.1093/nar/28.1.27 · External reference
The MetaCyc database of metabolic pathways and enzymes-a 2019 update
10.1093/nar/gkz862 · 2020 · External reference
10.1038/nbt.1672
10.1038/nbt.1672 · External reference
Rhea, the reaction knowledgebase in 2022
10.1093/nar/gkab1016 · 2022 · External reference
SABIO-RK: an updated resource for manually curated biochemical reaction kinetics
10.1093/nar/gkx1065 · 2018 · External reference
10.1093/ajcn/74.6.714
10.1093/ajcn/74.6.714 · External reference
10.1101/2023.01.28.526009
10.1101/2023.01.28.526009 · External reference
10.1002/jcc.21256
10.1002/jcc.21256 · External reference
Using graph neural networks for site-of-metabolism prediction and its applications to ranking promiscuous enzymatic products
10.1093/bioinformatics/btad089 · 2023 · External reference
