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References from Core promoterome of barley embryo. Local targets link to admitted publications; unresolved targets remain external evidence.
Biochemistry and structural biology of transcription factor IID (TFIID)
10.1146/annurev.bi.65.070196.004005 · 1996 · External reference
10.1038/s41586-022-04877-w
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10.1016/j.molcel.2022.04.009
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10.1038/s41586-022-04779-x
10.1038/s41586-022-04779-x · External reference
10.1016/j.semcdb.2016.01.014
10.1016/j.semcdb.2016.01.014 · External reference
10.1101/gad.303149.117
10.1101/gad.303149.117 · External reference
The “initiator” as a transcription control element
10.1016/0092-8674(89)90176-1 · 1989 · External reference
Identification of plant promoter constituents by analysis of local distribution of short sequences
10.1186/1471-2164-8-67 · 2007 · External reference
10.1111/tpj.15957
10.1111/tpj.15957 · External reference
TC-motifs at the TATA-box expected position in plant genes: a novel class of motifs involved in the transcription regulation
10.1186/1471-2164-11-166 · 2010 · External reference
10.1016/j.celrep.2021.110221
10.1016/j.celrep.2021.110221 · External reference
DTIE, a novel core promoter element that directs start site selection in TATA-less genes
10.1093/nar/gkv1032 · 2016 · External reference
Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate
10.1186/s12864-018-4504-5 · 2018 · External reference
Reporter-ChIP-nexus reveals strong contribution of the Drosophila initiator sequence to RNA polymerase pausing
10.7554/elife.41461.030 · 2019 · External reference
10.1101/gad.293837.116
10.1101/gad.293837.116 · External reference
10.1073/pnas.092141899
10.1073/pnas.092141899 · External reference
10.1016/j.cell.2012.12.005
10.1016/j.cell.2012.12.005 · External reference
10.1038/ng1789
10.1038/ng1789 · External reference
Histone variants and modifications in plant gene regulation
10.1016/j.pbi.2010.11.005 · 2011 · External reference
10.1016/j.cell.2007.08.016
10.1016/j.cell.2007.08.016 · External reference
10.1038/nature12974
10.1038/nature12974 · External reference
Core Promoter Plasticity Between Maize Tissues and Genotypes Contrasts with Predominance of Sharp Transcription Initiation Sites
10.1105/tpc.15.00630 · 2015 · External reference
10.1073/pnas.2136655100
10.1073/pnas.2136655100 · External reference
10.1111/j.1365-313x.2009.03958.x
10.1111/j.1365-313x.2009.03958.x · External reference
10.1126/science.1162228
10.1126/science.1162228 · External reference
10.1126/science.1112014
10.1126/science.1112014 · External reference
10.1038/nature13182
10.1038/nature13182 · External reference
Characterization of Promoter Bidirectionality and Antisense RNAs by Inactivation of Nuclear RNA Decay Pathways
10.1105/tpc.19.00815 · 2020 · External reference
10.1038/s41477-021-00932-y
10.1038/s41477-021-00932-y · External reference
10.1093/plcell/koab077
10.1093/plcell/koab077 · External reference
10.1111/pbi.13816
10.1111/pbi.13816 · External reference
A Genome Assembly of the Barley “Transformation Reference” Cultivar Golden Promise
10.1534/g3.119.401010 · 2020 · External reference
Isolation of High Purity Tissues from Developing Barley Seeds
10.3791/61681 · 2020 · External reference
10.1093/bioinformatics/btv145
10.1093/bioinformatics/btv145 · External reference
Global analysis of LARP1 translation targets reveals tunable and dynamic features of 5′ TOP motifs
10.1073/pnas.1912864117 · 2020 · External reference
10.1101/809988
10.1101/809988 · External reference
10.1371/journal.pone.0021800
10.1371/journal.pone.0021800 · External reference
10.1371/journal.pgen.1002777
10.1371/journal.pgen.1002777 · External reference
10.1038/nprot.2017.124
10.1038/nprot.2017.124 · External reference
10.1038/nature22043
10.1038/nature22043 · External reference
The transcriptome landscape of developing barley seeds reveals H3K27me3 dynamics in endosperm tissues
2023 · External reference
10.1201/b16589-5
10.1201/b16589-5 · External reference
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
10.1186/1471-2105-12-323 · 2011 · External reference
10.1093/nar/gkv054
10.1093/nar/gkv054 · External reference
10.1038/nature01763
10.1038/nature01763 · External reference
Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation
2023 · External reference
The Eukaryotic Promoter Database EPD
10.1093/nar/26.1.353 · 1998 · External reference
10.1093/bioinformatics/btr064
10.1093/bioinformatics/btr064 · External reference
10.1093/nar/gkaa563
10.1093/nar/gkaa563 · External reference
RSAT 2022: regulatory sequence analysis tools
10.1093/nar/gkac312 · 2022 · External reference
10.1093/bioinformatics/btt663
10.1093/bioinformatics/btt663 · External reference
10.1038/ng.3937
10.1038/ng.3937 · External reference
10.1111/j.1469-8137.2011.03828.x
10.1111/j.1469-8137.2011.03828.x · External reference
EORNA, a barley gene and transcript abundance database
10.1038/s41597-021-00872-4 · 2021 · External reference
Unresolved reference
External reference
10.1371/journal.pgen.1001274
10.1371/journal.pgen.1001274 · External reference
10.1038/nmeth.1906
10.1038/nmeth.1906 · External reference
10.1038/nature11233
10.1038/nature11233 · External reference
The repetitive landscape of the 5100 Mbp barley genome
10.1186/s13100-017-0102-3 · 2017 · External reference
Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters
10.1186/gb-2006-7-8-r78 · 2006 · External reference
10.1038/s41580-018-0028-8
10.1038/s41580-018-0028-8 · External reference
A Conserved GA Element in TATA-Less RNA Polymerase II Promoters
10.1371/journal.pone.0027595 · 2011 · External reference
10.1101/gad.219626.113
10.1101/gad.219626.113 · External reference
10.1101/gr.156232.113
10.1101/gr.156232.113 · External reference
10.1101/gr.112128.110
10.1101/gr.112128.110 · External reference
Abundant capped RNAs are derived from mRNA cleavage at 3′UTR G-Quadruplexes
2023 · External reference
Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae
2020 · External reference
A successful hybrid deep learning model aiming at promoter identification
2022 · External reference
