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References from DeepNeuropePred: A robust and universal tool to predict cleavage sites from neuropeptide precursors by protein language model. Local targets link to admitted publications; unresolved targets remain external evidence.
Neuropeptide signalling systems - an underexplored target for venom drug discovery
10.1016/j.bcp.2020.114129 · 2020 · External reference
What are neuropeptides?
10.1007/978-1-61779-310-3_1 · 2011 · External reference
NeuroPep: a comprehensive resource of neuropeptides
10.1093/database/bav038 · 2015 · External reference
10.1016/s0028-3908(00)00010-1
10.1016/s0028-3908(00)00010-1 · External reference
Peptides and food intake
10.3389/fendo.2014.00058 · 2014 · External reference
Central pathways integrating metabolism and reproduction in teleosts
10.3389/fendo.2014.00036 · 2014 · External reference
10.1016/j.npep.2013.10.014
10.1016/j.npep.2013.10.014 · External reference
Recent advances in neuropeptide signaling in Drosophila, from genes to physiology and behavior
10.1016/j.pneurobio.2019.02.003 · 2019 · External reference
10.1016/s0301-0082(02)00057-6
10.1016/s0301-0082(02)00057-6 · External reference
Evolution of vertebrate neuropeptides
10.1016/s0361-9230(01)00556-1 · 2001 · External reference
More than two decades of research on insect neuropeptide GPCRs: an overview
10.3389/fendo.2012.00151 · 2012 · External reference
Prediction of neuropeptide prohormone cleavages with application to RFamides
10.1016/j.peptides.2005.07.026 · 2006 · External reference
10.1074/jbc.m206257200
10.1074/jbc.m206257200 · External reference
10.1002/jms.744
10.1002/jms.744 · External reference
Peptidomics of CNS-associated neurohemal systems of adult Drosophila melanogaster: a mass spectrometric survey of peptides from individual flies
10.1002/cne.20145 · 2004 · External reference
10.1002/mas.20055
10.1002/mas.20055 · External reference
A novel prohormone processing site in Aplysia californica: the Leu-Leu rule
10.1046/j.1471-4159.2002.01070.x · 2002 · External reference
Bridging neuropeptidomics and genomics with bioinformatics: prediction of mammalian neuropeptide prohormone processing
10.1021/pr0504541 · 2006 · External reference
10.1021/pr034046d
10.1021/pr034046d · External reference
10.1093/bioinformatics/btn044
10.1093/bioinformatics/btn044 · External reference
Deep learning for mining protein data
10.1093/bib/bbz156 · 2021 · External reference
A survey on deep learning in DNA/RNA motif mining
2021 · External reference
Comprehensive assessment of machine learning-based methods for predicting antimicrobial peptides
2021 · External reference
10.1093/bioinformatics/btz464
10.1093/bioinformatics/btz464 · External reference
Unresolved reference
External reference
Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences
10.1073/pnas.2016239118 · 2021 · External reference
ProtTrans: toward understanding the language of life through self-supervised learning
10.1109/tpami.2021.3095381 · 2022 · External reference
10.1093/bioinformatics/btac474
10.1093/bioinformatics/btac474 · External reference
10.1038/s41592-019-0598-1
10.1038/s41592-019-0598-1 · External reference
10.1016/j.cels.2021.05.017
10.1016/j.cels.2021.05.017 · External reference
SignalP 6.0 predicts all five types of signal peptides using protein language models
10.1038/s41587-021-01156-3 · 2022 · External reference
DeepLoc 2.0: multi-label subcellular localization prediction using protein language models
10.1093/nar/gkac278 · 2022 · External reference
Identify bitter peptides by using deep representation learning features
2022 · External reference
NeuroPred-PLM: an interpretable and robust model for neuropeptide prediction by protein language model
2023 · External reference
Res-Dom: predicting protein domain boundary from sequence using deep residual network and Bi-LSTM
10.1093/bioadv/vbac060 · 2022 · External reference
10.1007/978-3-031-23198-8_26
10.1007/978-3-031-23198-8_26 · External reference
10.1016/j.csbj.2022.04.024 · Admitted local publication
UniProt: the universal protein knowledgebase in 2021
10.1093/nar/gkaa1100 · 2021 · External reference
CD-HIT: accelerated for clustering the next-generation sequencing data
10.1093/bioinformatics/bts565 · 2012 · External reference
10.1038/s41587-019-0036-z
10.1038/s41587-019-0036-z · External reference
Visualizing data using t-SNE
2008 · External reference
10.1021/acs.jproteome.8b00155
10.1021/acs.jproteome.8b00155 · External reference
