Research graph
References from HiOmics: A cloud-based one-stop platform for the comprehensive analysis of large-scale omics data. Local targets link to admitted publications; unresolved targets remain external evidence.
A scoping review on deep learning for next-generation RNA-Seq. Data analysis
10.1007/s10142-023-01064-6 · 2023 · External reference
10.1016/j.euroneuro.2023.01.001
10.1016/j.euroneuro.2023.01.001 · External reference
OmicSDK-transcriptomics: a web platform for transcriptomics data analysis
2023 · External reference
10.1016/j.drudis.2021.07.002
10.1016/j.drudis.2021.07.002 · External reference
A roadmap for multi-omics data integration using deep learning
10.1093/bib/bbab454 · 2022 · External reference
LinkedOmics: analyzing multi-omics data within and across 32 cancer types
10.1093/nar/gkx1090 · 2018 · External reference
A multi-omics view of the complex mechanism of vascular calcification
2021 · External reference
The essential toolbox of data science: python, R, git, and docker
10.1007/978-1-0716-0239-3_15 · 2020 · External reference
Alignment of biological sequences with jalview
10.1007/978-1-0716-1036-7_13 · 2021 · External reference
MEGA X: molecular evolutionary genetics analysis across computing platforms
10.1093/molbev/msy096 · 2018 · External reference
10.1086/519795
10.1086/519795 · External reference
10.1101/gr.1239303
10.1101/gr.1239303 · External reference
On the lifetime of bioinformatics web services
10.1093/nar/gkaa1125 · 2020 · External reference
10.1093/bib/bby023
10.1093/bib/bby023 · External reference
ImageGP: An easy‐to‐use data visualization web server for scientific researchers
10.1002/imt2.5 · 2022 · External reference
The START App: a web-based RNAseq analysis and visualization resource
10.1093/bioinformatics/btw624 · 2017 · External reference
CANEapp: a user-friendly application for automated next generation transcriptomic data analysis
10.1186/s12864-015-2346-y · 2016 · External reference
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
10.1093/nar/gky310 · 2018 · External reference
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
10.1093/nar/gky901 · 2019 · External reference
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
10.1038/s41467-019-09234-6 · 2019 · External reference
Galaxy: a web‐based genome analysis tool for experimentalists
10.1002/0471142727.mb1910s89 · 2010 · External reference
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Hiplot: a comprehensive and easy-to-use web service for boosting publication-ready biomedical data visualization
2022 · External reference
Qiita: rapid, web-enabled microbiome meta-analysis
10.1038/s41592-018-0141-9 · 2018 · External reference
DolphinNext: a distributed data processing platform for high throughput genomics
10.1186/s12864-020-6714-x · 2020 · External reference
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A workflow reproducibility scale for automatic validation of biological interpretation results
10.1093/gigascience/giad031 · 2022 · External reference
10.1038/533452a
10.1038/533452a · External reference
Container-based clinical solutions for portable and reproducible image analysis
10.1007/s10278-018-0089-4 · 2018 · External reference
Research and design of docker technology based authority management system
2022 · External reference
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10.1038/s41422-020-0322-9
10.1038/s41422-020-0322-9 · External reference
MVIP: multi-omics portal of viral infection
10.1093/nar/gkab958 · 2022 · External reference
10.1021/acsnano.2c06748
10.1021/acsnano.2c06748 · External reference
GenomeFLTR: filtering reads made easy
10.1093/nar/gkad410 · 2023 · External reference
Cloud computing for genomic data analysis and collaboration
10.1038/nrg.2018.8 · 2018 · External reference
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IntLIM: integration using linear models of metabolomics and gene expression data
2018 · External reference
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10.1007/s13238-020-00724-8
10.1007/s13238-020-00724-8 · External reference
EasyAmplicon: an easy‐to‐use, open‐source, reproducible, and community‐based pipeline for amplicon data analysis in microbiome research
2023 · External reference
10.1016/j.csbj.2021.06.030
10.1016/j.csbj.2021.06.030 · External reference
RAP: RNA-Seq analysis pipeline, a new cloud-based NGS web application
10.1186/1471-2164-16-s6-s3 · 2015 · External reference
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
10.1093/nar/gkaa434 · 2020 · External reference
Deep learning in cancer diagnosis, prognosis and treatment selection
10.1186/s13073-021-00968-x · 2021 · External reference
Deep learning in bioinformatics and biomedicine
10.1093/bib/bbab087 · 2021 · External reference
10.1038/s41576-019-0122-6
10.1038/s41576-019-0122-6 · External reference
10.1093/bib/bbaa204
10.1093/bib/bbaa204 · External reference
Deep learning in proteomics
2020 · External reference
