Research graph
References from Recent advances in spatially variable gene detection in spatial transcriptomics. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/s41592-019-0548-y
10.1038/s41592-019-0548-y · External reference
A scalable technology for measuring genome-wide expression at high spatial resolution
10.1126/science.aaw1219 · 2019 · External reference
10.1038/s41587-020-0739-1
10.1038/s41587-020-0739-1 · External reference
10.1093/biomet/37.1-2.17
10.1093/biomet/37.1-2.17 · External reference
The contiguity ratio and statistical mapping
1954 · External reference
10.1038/nmeth.4636
10.1038/nmeth.4636 · External reference
10.1101/2021.10.27.466045
10.1101/2021.10.27.466045 · External reference
10.1038/s41592-019-0701-7
10.1038/s41592-019-0701-7 · External reference
nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes
10.1038/s41467-023-39748-z · 2023 · External reference
10.1093/bioinformatics/btab455
10.1093/bioinformatics/btab455 · External reference
10.1038/nmeth.4634
10.1038/nmeth.4634 · External reference
Identification of spatially variable genes with graph cuts
10.1038/s41467-022-33182-3 · 2022 · External reference
10.1093/bioinformatics/btab164
10.1093/bioinformatics/btab164 · External reference
10.1101/2020.08.12.248971
10.1101/2020.08.12.248971 · External reference
10.1101/gr.271288.120
10.1101/gr.271288.120 · External reference
Giotto: a toolbox for integrative analysis and visualization of spatial expression data
2021 · External reference
10.1016/j.cell.2021.04.048
10.1016/j.cell.2021.04.048 · External reference
10.1038/s41592-021-01358-2
10.1038/s41592-021-01358-2 · External reference
10.1186/s13059-021-02404-0
10.1186/s13059-021-02404-0 · External reference
SINFONIA: scalable identification of spatially variable genes for deciphering spatial domains
2023 · External reference
10.1093/bioinformatics/btab486
10.1093/bioinformatics/btab486 · External reference
Modeling zero inflation is not necessary for spatial transcriptomics
10.1186/s13059-022-02684-0 · 2022 · External reference
10.1002/sim.9530
10.1002/sim.9530 · External reference
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with bioconductor
2016 · External reference
10.1093/bioinformatics/btw777
10.1093/bioinformatics/btw777 · External reference
10.1093/bioinformatics/btab471
10.1093/bioinformatics/btab471 · External reference
Identification of cell-type-specific spatially variable genes accounting for excess zeros
10.1093/bioinformatics/btac457 · 2022 · External reference
10.21203/rs.3.rs-3058056/v1
10.21203/rs.3.rs-3058056/v1 · External reference
10.1016/j.cels.2021.04.008
10.1016/j.cels.2021.04.008 · External reference
ACAT: a fast and powerful p value combination method for rare-variant analysis in sequencing studies
10.1016/j.ajhg.2019.01.002 · 2019 · External reference
10.1214/15-aos1407
10.1214/15-aos1407 · External reference
Hypothesis testing in semiparametric additive mixed models
10.1093/biostatistics/4.1.57 · 2003 · External reference
A double Metropolis–Hastings sampler for spatial models with intractable normalizing constants
10.1080/00949650902882162 · 2010 · External reference
Dimension-agnostic and granularity-based spatially variable gene identification using BSP
10.1038/s41467-023-43256-5 · 2023 · External reference
10.1038/s41467-022-34879-1
10.1038/s41467-022-34879-1 · External reference
10.1111/j.2517-6161.1995.tb02031.x
10.1111/j.2517-6161.1995.tb02031.x · External reference
10.1073/pnas.1530509100
10.1073/pnas.1530509100 · External reference
10.1214/aos/1013699998
10.1214/aos/1013699998 · External reference
Unresolved reference
2013 · External reference
SRTsim: spatial pattern preserving simulations for spatially resolved transcriptomics
10.1186/s13059-023-02879-z · 2023 · External reference
10.1101/2022.11.23.517747
10.1101/2022.11.23.517747 · External reference
10.1038/s41592-021-01255-8
10.1038/s41592-021-01255-8 · External reference
10.1101/2022.11.07.515535
10.1101/2022.11.07.515535 · External reference
10.1093/nar/gkab043
10.1093/nar/gkab043 · External reference
10.1038/s41587-021-00830-w
10.1038/s41587-021-00830-w · External reference
10.1186/s13059-021-02362-7
10.1186/s13059-021-02362-7 · External reference
scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
2023 · External reference
