Research graph
References from Computational methods for alignment and integration of spatially resolved transcriptomics data. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1126/science.abq4964
10.1126/science.abq4964 · External reference
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10.1038/nmeth.4071 · External reference
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10.1073/pnas.1808950116 · External reference
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10.1038/s41592-021-01276-3 · External reference
10.1038/nmeth.2892
10.1038/nmeth.2892 · External reference
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10.1038/s41592-018-0175-z · External reference
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10.1126/science.aaa6090 · External reference
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10.1126/science.aaf2403 · External reference
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10.1038/s41592-019-0548-y · External reference
10.1126/science.aaw1219
10.1126/science.aaw1219 · External reference
10.1038/s41587-020-0739-1
10.1038/s41587-020-0739-1 · External reference
Large field of view-spatially resolved transcriptomics at nanoscale resolution
2021 · External reference
10.1038/nm.3488
10.1038/nm.3488 · External reference
10.1038/nmeth.2869
10.1038/nmeth.2869 · External reference
10.1016/j.cell.2018.07.010
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10.1016/j.cell.2020.10.026 · External reference
10.1126/science.abg7216
10.1126/science.abg7216 · External reference
High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq
2023 · External reference
10.1038/s41592-022-01409-2
10.1038/s41592-022-01409-2 · External reference
10.1038/s41587-022-01448-2
10.1038/s41587-022-01448-2 · External reference
10.1186/s13059-022-02653-7
10.1186/s13059-022-02653-7 · External reference
10.1038/s41592-020-01038-7
10.1038/s41592-020-01038-7 · External reference
10.1016/j.jgg.2023.03.011
10.1016/j.jgg.2023.03.011 · External reference
Spatial omics: navigating to the golden era of cancer research
10.1002/ctm2.696 · 2022 · External reference
10.1126/science.280.5363.585
10.1126/science.280.5363.585 · External reference
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10.1126/science.1072241 · External reference
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10.1038/nmeth.1253 · External reference
10.1038/s41592-023-01972-2
10.1038/s41592-023-01972-2 · External reference
Principles and challenges of modeling temporal and spatial omics data
2023 · External reference
3D reconstruction of spatial expression
10.1038/s41592-022-01476-5 · 2022 · External reference
10.1016/j.gpb.2022.10.001
10.1016/j.gpb.2022.10.001 · External reference
Data integration: A theoretical perspective
10.1145/543613.543644 · 2002 · External reference
Data integration in biological research: an overview
2015 · External reference
Methods for biological data integration: perspectives and challenges
10.1098/rsif.2015.0571 · 2015 · External reference
SPIRAL: integrating and aligning spatially resolved transcriptomics data across different experiments, conditions, and technologies
10.1186/s13059-023-03078-6 · 2023 · External reference
BASS: multi-scale and multi-sample analysis enables accurate cell type clustering and spatial domain detection in spatial transcriptomic studies
10.1186/s13059-022-02734-7 · 2022 · External reference
10.1038/s41467-023-36796-3
10.1038/s41467-023-36796-3 · External reference
DeepST: identifying spatial domains in spatial transcriptomics by deep learning
2022 · External reference
Unsupervised spatially embedded deep representation of spatial transcriptomics
2021 · External reference
10.1038/s41467-022-29439-6
10.1038/s41467-022-29439-6 · External reference
Integrating spatial transcriptomics data across different conditions, technologies and developmental stages
2023 · External reference
Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST
10.1038/s41467-023-35947-w · 2023 · External reference
Construction of a 3D whole organism spatial atlas by joint modelling of multiple slices with deep neural networks
2023 · External reference
10.1038/s41592-022-01459-6
10.1038/s41592-022-01459-6 · External reference
10.1101/2023.01.08.523162
10.1101/2023.01.08.523162 · External reference
Unresolved reference
External reference
A least squares estimate of satellite attitude
1965 · External reference
A solution for the best rotation to relate two sets of vectors
10.1107/s0567739476001873 · 1976 · External reference
Algorithms for non-negative matrix factorization
2000 · External reference
Unresolved reference
External reference
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1998 · External reference
10.1109/ictai50040.2020.00154
10.1109/ictai50040.2020.00154 · External reference
Least-squares fitting of two 3-D point sets
10.1109/tpami.1987.4767965 · 1987 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1038/s41593-020-00787-0
10.1038/s41593-020-00787-0 · External reference
Gaussian mixture models
2009 · External reference
Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium
10.1038/s42003-022-03050-3 · 2022 · External reference
Epidemiology, pathophysiology, and diagnosis of rheumatoid arthritis: a synopsis
2014 · External reference
10.1056/nejmra1004965
10.1056/nejmra1004965 · External reference
10.1038/nri1786
10.1038/nri1786 · External reference
10.1038/nri.2016.124
10.1038/nri.2016.124 · External reference
10.1038/s41590-019-0378-1
10.1038/s41590-019-0378-1 · External reference
10.1038/s41592-021-01336-8
10.1038/s41592-021-01336-8 · External reference
10.1126/science.aat5691
10.1126/science.aat5691 · External reference
Dimension-agnostic and granularity-based spatially variable gene identification using BSP
10.1038/s41467-023-43256-5 · 2023 · External reference
Solid-phase capture and profiling of open chromatin by spatial ATAC
2023 · External reference
Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
10.1038/s43588-022-00251-y · 2022 · External reference
Spatial-linked alignment tool (SLAT) for aligning heterogenous slices
10.1038/s41467-023-43105-5 · 2023 · External reference
