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References from A novel framework for human leukocyte antigen (HLA) genotyping using probe capture-based targeted next-generation sequencing and computational analysis. Local targets link to admitted publications; unresolved targets remain external evidence.
The human Major Histocompatibility Complex as a paradigm in genomics research
10.1093/bfgp/elp010 · 2009 · External reference
10.1016/j.imlet.2011.01.002
10.1016/j.imlet.2011.01.002 · External reference
10.1146/annurev-genom-091212-153455
10.1146/annurev-genom-091212-153455 · External reference
An update of the HLA genomic region, locus information and disease associations: 2004
10.1111/j.1399-0039.2004.00327.x · 2004 · External reference
Role of HLA-B27 in the pathogenesis of ankylosing spondylitis (Review)
10.3892/mmr.2017.6248 · 2017 · External reference
10.1016/j.jaut.2015.06.010
10.1016/j.jaut.2015.06.010 · External reference
Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study
10.1038/ncomms8633 · 2015 · External reference
Comprehensive Genotyping in Two Homogeneous Graves' Disease Samples Reveals Major and Novel HLA Association Alleles
10.1371/journal.pone.0016635 · 2011 · External reference
Human leukocyte antigens and systemic lupus erythematosus: a protective role for the HLA-DR6 alleles DRB1*13:02 and *14:03
10.1371/journal.pone.0087792 · 2014 · External reference
Unresolved reference
External reference
Human Leukocyte Antigens and Systemic Lupus Erythematosus: A Protective Role for the HLA-DR6 Alleles DRB1*13:02 and *14:03
10.1371/journal.pone.0087792 · 2014 · External reference
10.1111/j.1399-0039.1993.tb01991.x
10.1111/j.1399-0039.1993.tb01991.x · External reference
Rapid HLA-DQB typing by eight polymerase chain reaction amplifications with sequence-specific primers (PCR-SSP)
10.1016/0198-8859(93)90502-r · 1993 · External reference
Low-resolution DNA typing for HLA-B using sequence-specific primers in allele- or group-specific ARMS/PCR
10.1111/j.1399-0039.1994.tb02372.x · 1994 · External reference
Phototyping: comprehensive DNA typing for HLA-A, B, C, DRB1, DRB3, DRB4, DRB5 & DQB1 by PCR with 144 primer mixes utilizing sequence-specific primers (PCR-SSP)
10.1111/j.1399-0039.1995.tb03127.x · 1995 · External reference
HLA-DR typing using DNA amplification by the polymerase chain reaction and sequential hybridization to sequence-specific oligonucleotide probes
10.1007/bf00241635 · 1990 · External reference
10.1016/0198-8859(91)90034-7
10.1016/0198-8859(91)90034-7 · External reference
Eleventh International Histocompatibility Workshop Reference Protocol for the HLA DNA-Typing Technique
1991 · External reference
Characterization of the HLA-A polymorphism by locus-specific polymerase chain reaction amplification and oligonucleotide hybridization
10.1016/0198-8859(94)90045-0 · 1994 · External reference
10.1007/978-3-642-29467-9_21
10.1007/978-3-642-29467-9_21 · 2012 · External reference
Unresolved reference
2010 · External reference
10.1073/pnas.74.12.5463
10.1073/pnas.74.12.5463 · External reference
16(th) IHIW: review of HLA typing by NGS
10.1111/iji.12024 · 2013 · External reference
10.1111/j.1399-0039.2009.01345.x
10.1111/j.1399-0039.2009.01345.x · External reference
10.1038/nrg2626
10.1038/nrg2626 · External reference
HLA typing by next-generation sequencing - getting closer to reality
10.1111/tan.12298 · 2014 · External reference
High-sensitivity HLA typing by Saturated Tiling Capture Sequencing (STC-Seq)
10.1186/s12864-018-4431-5 · 2018 · External reference
10.1016/j.humimm.2016.04.002
10.1016/j.humimm.2016.04.002 · External reference
Comparison of next-generation sequencing systems
2012 · External reference
10.1016/j.humimm.2021.02.010
10.1016/j.humimm.2021.02.010 · External reference
High-Resolution HLA-Typing by Next-Generation Sequencing of Randomly Fragmented Target DNA
10.1007/978-1-4939-8546-3_5 · 2018 · External reference
OR15 New NGS HLA typing by targeted enrichment procedure, capture method
10.1016/j.humimm.2016.07.027 · 2016 · External reference
Benchmarking the Human Leukocyte Antigen Typing Performance of Three Assays and Seven Next-Generation Sequencing-Based Algorithms
10.3389/fimmu.2021.652258 · 2021 · External reference
Derivation of HLA types from shotgun sequence datasets
10.1186/gm396 · 2012 · External reference
HLA typing from RNA-seq data using hierarchical read weighting [corrected]
10.1371/journal.pone.0067885 · 2013 · External reference
10.1093/nar/gkt481
10.1093/nar/gkt481 · External reference
HLA typing from RNA-Seq sequence reads
10.1186/gm403 · 2012 · External reference
10.1093/bioinformatics/btu548
10.1093/bioinformatics/btu548 · External reference
Development of a high-resolution NGS-based HLA-typing and analysis pipeline
10.1093/nar/gkv184 · 2015 · External reference
HLAreporter: a tool for HLA typing from next generation sequencing data
10.1186/s13073-015-0145-3 · 2015 · External reference
10.1038/nbt.3344
10.1038/nbt.3344 · External reference
HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data
10.1186/1471-2164-16-s2-s7 · 2015 · External reference
High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs
10.1371/journal.pcbi.1005151 · 2016 · External reference
Fast and accurate HLA typing from short-read next-generation sequence data with xHLA
10.1073/pnas.1707945114 · 2017 · External reference
10.1002/humu.23230
10.1002/humu.23230 · External reference
HLAscan: genotyping of the HLA region using next-generation sequencing data
10.1186/s12859-017-1671-3 · 2017 · External reference
PHLAT: inference of High-Resolution HLA Types from RNA and Whole Exome Sequencing
10.1007/978-1-4939-8546-3_13 · 2018 · External reference
Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery
10.1186/s13059-018-1388-2 · 2018 · External reference
High-sensitivity HLA typing by Saturated Tiling Capture Sequencing (STC-Seq)
10.1186/s12864-018-4431-5 · 2018 · External reference
Improved HLA typing of Class I and Class II alleles from next-generation sequencing data
10.1111/tan.13685 · 2019 · External reference
HLA*LA-HLA typing from linearly projected graph alignments
10.1093/bioinformatics/btz235 · 2019 · External reference
10.1038/s41587-019-0201-4
10.1038/s41587-019-0201-4 · External reference
10.1093/bioinformatics/btz474
10.1093/bioinformatics/btz474 · External reference
10.1016/j.crmeth.2023.100589
10.1016/j.crmeth.2023.100589 · External reference
10.1101/gr.277585.122
10.1101/gr.277585.122 · External reference
10.1186/s13073-015-0221-8
10.1186/s13073-015-0221-8 · External reference
10.3389/fimmu.2017.01815
10.3389/fimmu.2017.01815 · External reference
Evaluation of computational programs to predict HLA genotypes from genomic sequencing data
2018 · External reference
Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions
10.3389/fimmu.2022.987655 · 2022 · External reference
10.1016/j.humimm.2020.03.005
10.1016/j.humimm.2020.03.005 · External reference
10.1038/s41586-023-05896-x
10.1038/s41586-023-05896-x · External reference
Profiling genes encoding the adaptive immune receptor repertoire with gAIRR Suite
10.3389/fimmu.2022.922513 · 2022 · External reference
10.1093/bioinformatics/bty191
10.1093/bioinformatics/bty191 · External reference
