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References from Advanced computational predictive models of miRNA-mRNA interaction efficiency. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1038/nri2708 · 2010 · External reference
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2006 · External reference
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MicroRNA: biogenesis, function and role in cancer
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Regulation of mRNA translation and stability by microRNAs
10.1146/annurev-biochem-060308-103103 · 2010 · External reference
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10.1016/j.cell.2004.12.035 · External reference
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miRNAs found by genomics and reverse genetics
2004 · External reference
microPrimer: the biogenesis and function of microRNA
10.1242/dev.02070 · 2005 · External reference
MicroRNAs and cancer
10.1002/bjs.5673 · 2007 · External reference
MicroRNAs as oncogenes and tumor suppressors
10.1056/nejmp058190 · 2005 · External reference
Review MicroRNAs: genomics, biogenesis, mechanism, and function
2004 · External reference
10.1093/nar/gkt193
10.1093/nar/gkt193 · External reference
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10.3389/fgene.2019.00478
10.3389/fgene.2019.00478 · External reference
Bidirectional promoter engineering for single cell microRNA sensors in embryonic stem cells
10.1371/journal.pone.0155177 · 2016 · External reference
Accurate transcriptome-wide prediction of microRNA targets and small interfering RNA off-targets with MIRZA-G
10.1093/nar/gkv050 · 2015 · External reference
TarPmiR: a new approach for microRNA target site prediction
10.1093/bioinformatics/btw318 · 2016 · External reference
Accurate microRNA target prediction correlates with protein repression levels
10.1186/1471-2105-10-295 · 2009 · External reference
miTALOS v2: analyzing tissue specific microRNA function
10.1371/journal.pone.0151771 · 2016 · External reference
MiRmap: comprehensive prediction of microRNA target repression strength
10.1093/nar/gks901 · 2012 · External reference
10.1101/gr.205146.116
10.1101/gr.205146.116 · External reference
The roles of binding site arrangement and combinatorial targeting in microRNA repression of gene expression
2007 · External reference
Predicting effective microRNA target sites in mammalian mRNAs
2015 · External reference
New computational model for miRNA-mediated repression reveals novel regulatory roles of miRNA bindings inside the coding region
2020 · External reference
10.1016/j.cell.2013.03.043
10.1016/j.cell.2013.03.043 · External reference
The human transcriptome is enriched for miRNA-binding sites located in cooperativity-permitting distance
10.4161/rna.24955 · 2013 · External reference
10.1261/rna.2778911
10.1261/rna.2778911 · External reference
10.1016/j.molcel.2014.02.013
10.1016/j.molcel.2014.02.013 · External reference
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10.1073/pnas.0511045103 · External reference
PUMA: PANDA using MicroRNA associations
10.1093/bioinformatics/btaa571 · 2020 · External reference
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10.1073/pnas.1920404117 · External reference
MiR-205-5p and miR-342-3p cooperate in the repression of the E2F1 transcription factor in the context of anticancer chemotherapy resistance
10.7150/thno.19904 · 2018 · External reference
Tackling the widespread and critical impact of batch effects in high-throughput data
10.1038/nrg2825 · 2010 · External reference
Removal of AU bias from microarray mRNA expression data enhances computational identification of active microRNAs
10.1371/journal.pcbi.1000189 · 2008 · External reference
Target gene expression levels and competition between transfected and endogenous microRNAs are strong confounding factors in microRNA high-throughput experiments
10.1186/1758-907x-3-3 · 2012 · External reference
Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets
10.1101/gr.091181.109 · 2009 · External reference
10.1261/rna.2387911
10.1261/rna.2387911 · External reference
10.1038/nbt.1543
10.1038/nbt.1543 · External reference
The biochemical basis of microRNA targeting efficacy
10.1126/science.aav1741 · 2019 · External reference
10.1101/gad.1184404
10.1101/gad.1184404 · External reference
10.3390/mps4010001
10.3390/mps4010001 · External reference
10.3390/biom12020332
10.3390/biom12020332 · External reference
10.1093/nar/gks657
10.1093/nar/gks657 · External reference
A mixed antagonistic/synergistic miRNA repression model enables accurate predictions of multi-input miRNA sensor activity
2018 · External reference
10.1093/nar/gkm133
10.1093/nar/gkm133 · External reference
MiRTarBase update 2022: An informative resource for experimentally validated miRNA-target interactions
10.1093/nar/gkab1079 · 2022 · External reference
10.1093/nar/gkt1393
10.1093/nar/gkt1393 · External reference
Simultaneous interrogation of cancer omics to identify subtypes with significant clinical differences
2019 · External reference
Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs
10.1038/nsmb.2115 · 2010 · External reference
Prediction of Mammalian MicroRNA Targets that they could have many more regulatory functions than those uncovered to date (Lagos-Quintana et al
2003 · External reference
Principles of microRNA-target recognition
2005 · External reference
10.1016/j.cell.2005.11.023
10.1016/j.cell.2005.11.023 · External reference
10.1261/rna.768207
10.1261/rna.768207 · External reference
Accurate transcriptome-wide prediction of microRNA targets and small interfering RNA off-targets with MIRZA-G
10.1093/nar/gkv050 · 2015 · External reference
10.1038/nmeth.1267
10.1038/nmeth.1267 · External reference
Online GESS: prediction of miRNA-like off-target effects in large-scale RNAi screen data by seed region analysis
10.1186/1471-2105-15-192 · 2014 · External reference
10.1038/nature03315
10.1038/nature03315 · External reference
Functional microRNA targets in protein coding sequences
10.1093/bioinformatics/bts043 · 2012 · External reference
ViennaRNA package 2.0
2011 · External reference
10.1073/pnas.0507443102
10.1073/pnas.0507443102 · External reference
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10.1016/j.cell.2007.04.037 · External reference
The role of site accessibility in microRNA target recognition
10.1038/ng2135 · 2007 · External reference
10.1038/nsmb1226
10.1038/nsmb1226 · External reference
Inference of miRNA targets using evolutionary conservation and pathway analysis
2007 · External reference
MicroRNA target site identification by integrating sequence and binding information
10.1038/nmeth.2489 · 2013 · External reference
10.1016/j.molcel.2014.03.045
10.1016/j.molcel.2014.03.045 · External reference
Target mRNA abundance dilutes microRNA and siRNA activity
10.1038/msb.2010.24 · 2010 · External reference
10.1101/gr.082701.108
10.1101/gr.082701.108 · External reference
The UCSC genome browser database
10.1093/nar/gkg129 · 2003 · External reference
Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data
2010 · External reference
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10.1038/nsmb.1552 · External reference
