Research graph
References from A survey of k-mer methods and applications in bioinformatics. Local targets link to admitted publications; unresolved targets remain external evidence.
Overview of next-generation sequencing technologies
10.1002/cpmb.59 · 2018 · External reference
Next-generation sequencing technologies: an overview
10.1016/j.humimm.2021.02.012 · 2021 · External reference
Advances and trends in omics technology development
10.3389/fmed.2022.911861 · 2022 · External reference
10.1016/j.csbj.2020.06.017 · Admitted local publication
10.3390/ht7010008
10.3390/ht7010008 · External reference
A review of methods and databases for metagenomic classification and assembly
10.1093/bib/bbx120 · 2019 · External reference
Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics
10.3389/fgene.2013.00288 · 2013 · External reference
10.1093/bioinformatics/btr011
10.1093/bioinformatics/btr011 · External reference
Computational performance assessment of k-mer counting algorithms
10.1089/cmb.2015.0199 · 2016 · External reference
A benchmark study of k-mer counting methods for high-throughput sequencing
2018 · External reference
MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments
10.1093/bioinformatics/btw584 · 2017 · External reference
A k-mer grammar analysis to uncover maize regulatory architecture
10.1186/s12870-019-1693-2 · 2019 · External reference
10.1371/journal.pcbi.1003711
10.1371/journal.pcbi.1003711 · External reference
10.1038/s41588-018-0062-7
10.1038/s41588-018-0062-7 · External reference
A compact, in vivo screen of all 6-mers reveals drivers of tissue-specific expression and guides synthetic regulatory element design
10.1186/gb-2013-14-7-r72 · 2013 · External reference
10.1126/scitranslmed.adj9283
10.1126/scitranslmed.adj9283 · External reference
A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria
10.1371/journal.pcbi.1006434 · 2018 · External reference
10.1186/s40168-017-0283-5
10.1186/s40168-017-0283-5 · External reference
10.1186/s13059-018-1568-0
10.1186/s13059-018-1568-0 · External reference
Antimicrobial Resistance Prediction in PATRIC and RAST
10.1038/srep27930 · 2016 · External reference
Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data
10.1093/jac/dkw184 · 2016 · External reference
Utilizing nullomers in cell-free RNA for early cancer detection
2023 · External reference
Identifying sequences for microbial communities using long -mer sequence signatures
10.3389/fmicb.2018.00872 · 2018 · External reference
10.1016/j.ymeth.2019.03.003
10.1016/j.ymeth.2019.03.003 · External reference
Unique -mer sequences for validating cancer-related substitution, insertion and deletion mutations
10.1093/narcan/zcaa034 · 2020 · External reference
Reference-free transcriptome exploration reveals novel RNAs for prostate cancer diagnosis
2019 · External reference
Reference-free transcriptome signatures for prostate cancer prognosis
10.1186/s12885-021-08021-1 · 2021 · External reference
Peptide absent sequences emerging in human cancers
10.1016/j.ejca.2023.113421 · 2024 · External reference
Leveraging sequences missing from the human genome to diagnose cancer
2023 · External reference
The effect of Nullomer-derived peptides 9R, 9S1R and 124R on the NCI-60 panel and normal cell lines
10.1186/s12885-017-3514-z · 2017 · External reference
Nullomer derived anticancer peptides (NulloPs): differential lethal effects on normal and cancer cells in vitro
10.1016/j.peptides.2012.09.015 · 2012 · External reference
10.1093/bioinformatics/btt310
10.1093/bioinformatics/btt310 · External reference
Determination of k-mer density in a DNA sequence and subsequent cluster formation algorithm based on the application of electronic filter
10.1038/s41598-021-93154-3 · 2021 · External reference
Mash Screen: high-throughput sequence containment estimation for genome discovery
10.1186/s13059-019-1841-x · 2019 · External reference
Robust k-mer frequency estimation using gapped k-mers
10.1007/s00285-013-0705-3 · 2014 · External reference
Counting Kmers for biological sequences at large scale
10.1007/s12539-019-00348-5 · 2020 · External reference
Comparative genomics analysis of repetitive elements in ten gymnosperm species: ‘dark repeatome’ and its abundance in conifer and species
10.3390/life11111234 · 2021 · External reference
Unbiased K-mer analysis reveals changes in copy number of highly repetitive sequences during maize domestication and improvement
10.1038/srep42444 · 2017 · External reference
Identifying genetic variants associated with amphotericin B (AMB) resistance in via merbased GWAS
10.3389/fgene.2023.1133593 · 2023 · External reference
Ultrafast prediction of somatic structural variations by filtering out reads matched to pan-genome k-mer sets
10.1038/s41551-022-00980-5 · 2023 · External reference
10.18632/oncotarget.25736
10.18632/oncotarget.25736 · External reference
10.1038/nbt.2515
10.1038/nbt.2515 · External reference
Targeted variant detection using unaligned RNA-Seq reads
10.26508/lsa.201900336 · 2019 · External reference
10.1093/bib/bbx037
10.1093/bib/bbx037 · External reference
10.1093/bioinformatics/btx304
10.1093/bioinformatics/btx304 · External reference
10.1186/s13059-020-02134-9
10.1186/s13059-020-02134-9 · External reference
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets
10.1093/bioinformatics/btaa487 · 2020 · External reference
Squeakr: an exact and approximate k-mer counting system
10.1093/bioinformatics/btx636 · 2018 · External reference
COBS: A Compact Bit-Sliced Signature Index
10.1007/978-3-030-32686-9_21 · 2019 · External reference
MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants
10.1093/bioinformatics/btad101 · 2023 · External reference
Genomic DNA k-mer spectra: models and modalities
10.1186/gb-2009-10-10-r108 · 2009 · External reference
10.1093/bioinformatics/bts690
10.1093/bioinformatics/bts690 · External reference
BLESS: bloom filter-based error correction solution for high-throughput sequencing reads
10.1093/bioinformatics/btu030 · 2014 · External reference
Trowel: a fast and accurate error correction module for Illumina sequencing reads
10.1093/bioinformatics/btu513 · 2014 · External reference
Intrinsic laws of k-mer spectra of genome sequences and evolution mechanism of genomes
10.1186/s12862-020-01723-3 · 2020 · External reference
10.1371/journal.pone.0258693
10.1371/journal.pone.0258693 · External reference
10.1186/1471-2164-9-509
10.1186/1471-2164-9-509 · External reference
Kodoja: a workflow for virus detection in plants using k-mer analysis of RNA-sequencing data
10.1099/jgv.0.001210 · 2019 · External reference
10.1038/nmeth.4197
10.1038/nmeth.4197 · External reference
RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
10.1093/bioinformatics/btu288 · 2014 · External reference
10.1038/nbt.2862
10.1038/nbt.2862 · External reference
Global pentapeptide statistics are far away from expected distributions
10.1038/s41598-018-33433-8 · 2018 · External reference
The determinants of the rarity of nucleic and peptide short sequences in nature
2023 · External reference
BLAST: at the core of a powerful and diverse set of sequence analysis tools
10.1093/nar/gkh435 · 2004 · External reference
10.1101/gr.229202
10.1101/gr.229202 · External reference
10.1371/journal.pone.0200323
10.1371/journal.pone.0200323 · External reference
Automated download and clean-up of family-specific databases for kmer-based virus identification
10.1093/bioinformatics/btaa857 · 2021 · External reference
10.1016/s0022-2836(05)80360-2
10.1016/s0022-2836(05)80360-2 · External reference
Reducing storage requirements for biological sequence comparison
10.1093/bioinformatics/bth408 · 2004 · External reference
Improving the performance of minimizers and winnowing schemes
10.1093/bioinformatics/btx235 · 2017 · External reference
A survey of mapping algorithms in the long-reads era
10.1186/s13059-023-02972-3 · 2023 · External reference
10.1186/s13059-016-0997-x
10.1186/s13059-016-0997-x · External reference
10.1038/nrg3068
10.1038/nrg3068 · External reference
10.1186/s13059-019-1829-6
10.1186/s13059-019-1829-6 · External reference
10.1089/cmb.2012.0021
10.1089/cmb.2012.0021 · External reference
The present and future of de novo whole-genome assembly
2018 · External reference
10.1038/nbt.2023
10.1038/nbt.2023 · External reference
A de novo reference assembly of the yellow mangrove Ceriops zippeliana genome
10.1093/g3journal/jkac025 · 2022 · External reference
A high-quality genome assembly of Lactarius hatsudake strain JH5
10.1093/g3journal/jkac262 · 2022 · External reference
10.1007/s11033-022-08157-8
10.1007/s11033-022-08157-8 · External reference
10.1186/s13059-014-0573-1
10.1186/s13059-014-0573-1 · External reference
Pangenome Graphs
10.1146/annurev-genom-120219-080406 · 2020 · External reference
10.1038/s41588-022-01043-w
10.1038/s41588-022-01043-w · External reference
Correcting errors in short reads by multiple alignments
10.1093/bioinformatics/btr170 · 2011 · External reference
RECKONER: read error corrector based on KMC
10.1093/bioinformatics/btw746 · 2017 · External reference
Illumina reads correction: evaluation and improvements
10.1038/s41598-024-52386-9 · 2024 · External reference
RACER: Rapid and accurate correction of errors in reads
10.1093/bioinformatics/btt407 · 2013 · External reference
Lighter: fast and memory-efficient sequencing error correction without counting
10.1186/s13059-014-0509-9 · 2014 · External reference
Karect: accurate correction of substitution, insertion and deletion errors for next-generation sequencing data
10.1093/bioinformatics/btv415 · 2015 · External reference
Denoising of aligned genomic data
10.1038/s41598-019-51418-z · 2019 · External reference
CARE 2.0: reducing false-positive sequencing error corrections using machine learning
10.1186/s12859-022-04754-3 · 2022 · External reference
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
10.1186/s13742-015-0089-y · 2015 · External reference
10.1186/s13059-020-1935-5
10.1186/s13059-020-1935-5 · External reference
Oxford nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
10.1101/gr.191395.115 · 2015 · External reference
10.1016/j.mib.2014.11.014
10.1016/j.mib.2014.11.014 · External reference
10.1038/nmeth.3444
10.1038/nmeth.3444 · External reference
A history of DNA sequence assembly
10.1515/itit-2015-0047 · 2016 · External reference
10.1038/nbt.3238
10.1038/nbt.3238 · External reference
10.1038/nmeth.2474
10.1038/nmeth.2474 · External reference
10.1101/gr.209247.116
10.1101/gr.209247.116 · External reference
A comparative evaluation of hybrid error correction methods for error-prone long reads
10.1186/s13059-018-1605-z · 2019 · External reference
Benchmarking of long-read correction methods
10.1093/nargab/lqaa037 · 2020 · External reference
A comprehensive evaluation of long read error correction methods
10.1186/s12864-020-07227-0 · 2020 · External reference
Predicting the mutations generated by repair of Cas9-induced double-strand breaks
2018 · External reference
10.1038/nbt.4192
10.1038/nbt.4192 · External reference
10.1089/crispr.2017.0012
10.1089/crispr.2017.0012 · External reference
10.1016/j.ymeth.2019.07.013
10.1016/j.ymeth.2019.07.013 · External reference
10.1089/crispr.2022.0042
10.1089/crispr.2022.0042 · External reference
10.1016/j.nbt.2023.04.001
10.1016/j.nbt.2023.04.001 · External reference
KmerKeys: a web resource for searching indexed genome assemblies and variants
10.1093/nar/gkac266 · 2022 · External reference
10.1093/bioinformatics/bty601
10.1093/bioinformatics/bty601 · External reference
Eukaryotic Genomes Show Strong Evolutionary Conservation of -mer Composition and Correlation Contributions between Introns and Intergenic Regions
10.3390/genes12101571 · 2021 · External reference
Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history
10.1186/s12864-021-07471-y · 2021 · External reference
A measure of the similarity of sets of sequences not requiring sequence alignment
10.1073/pnas.83.14.5155 · 1986 · External reference
Is multiple-sequence alignment required for accurate inference of phylogeny?
10.1080/10635150701294741 · 2007 · External reference
Asymptotic behaviour and optimal word size for exact and approximate word matches between random sequences
10.1186/1471-2105-7-s5-s21 · 2006 · External reference
Molecular phylogenetics before sequences: oligonucleotide catalogs as k-mer spectra
10.4161/rna.27505 · 2014 · External reference
mer similarity, networks of microbial genomes, and taxonomic rank
10.1128/msystems.00257-18 · 2018 · External reference
Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial)
10.3389/fmicb.2015.00678 · 2015 · External reference
10.1128/jvi.00601-10
10.1128/jvi.00601-10 · External reference
Kmer-db: instant evolutionary distance estimation
10.1093/bioinformatics/bty610 · 2019 · External reference
10.1093/bioinformatics/bty651
10.1093/bioinformatics/bty651 · External reference
BinDash 2.0: new MinHash scheme allows ultra-fast and accurate genome search and comparisons
2024 · External reference
Dashing: fast and accurate genomic distances with HyperLogLog
10.1186/s13059-019-1875-0 · 2019 · External reference
Dashing 2: genomic sketching with multiplicities and locality-sensitive hashing
2023 · External reference
Toward optimal fingerprint indexing for large scale genomics
2022 · External reference
Fractional hitting sets for efficient and lightweight genomic data sketching
2023 · External reference
Fast, lightweight, and accurate metagenomic functional profiling using FracMinHash sketches
2024 · External reference
Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis
10.1186/s12859-015-0875-7 · 2016 · External reference
Recovering full-length viral genomes from metagenomes
10.3389/fmicb.2015.01069 · 2015 · External reference
Real time metagenomics: using k-mers to annotate metagenomes
10.1093/bioinformatics/bts599 · 2012 · External reference
10.1186/s13059-020-02159-0
10.1186/s13059-020-02159-0 · External reference
Barcode identification for single cell genomics
10.1186/s12859-019-2612-0 · 2019 · External reference
10.1038/s41588-018-0207-8
10.1038/s41588-018-0207-8 · External reference
10.1038/nm.4517
10.1038/nm.4517 · External reference
Improved metagenomic analysis with Kraken 2
2019 · External reference
YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample
2023 · External reference
Fast and sensitive taxonomic classification for metagenomics with Kaiju
10.1038/ncomms11257 · 2016 · External reference
Genome binning of viral entities from bulk metagenomics data
10.1038/s41467-022-28581-5 · 2022 · External reference
10.1101/gr.213959.116
10.1101/gr.213959.116 · External reference
10.1038/s41576-019-0113-7
10.1038/s41576-019-0113-7 · External reference
10.1146/annurev-pathmechdis-012418-012751
10.1146/annurev-pathmechdis-012418-012751 · External reference
Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons
10.1186/s12864-016-2889-6 · 2016 · External reference
Predicting bacterial resistance from whole-genome sequences using k-mers and stability selection
10.1186/s12859-018-2403-z · 2018 · External reference
Interpreting k-mer–based signatures for antibiotic resistance prediction
10.1093/gigascience/giaa110 · 2020 · External reference
Frequentmers - a novel way to look at metagenomic Next Generation Sequencing data and an application in detecting liver cirrhosis
2023 · External reference
10.1021/acs.jproteome.9b00044
10.1021/acs.jproteome.9b00044 · External reference
10.1016/j.ygeno.2018.08.010
10.1016/j.ygeno.2018.08.010 · External reference
10.2471/blt.16.182105
10.2471/blt.16.182105 · External reference
Taxonomic analysis of metagenomic data with kASA
10.1093/nar/gkab200 · 2021 · External reference
DeepAdd: Protein function prediction from k-mer embedding and additional features
10.1016/j.compbiolchem.2020.107379 · 2020 · External reference
10.1073/pnas.1525139113
10.1073/pnas.1525139113 · External reference
The impact of codon choice on translation process in Saccharomyces cerevisiae: folding class, protein function and secondary structure
10.1016/j.jtbi.2021.110806 · 2021 · External reference
10.1038/s41587-023-01773-0
10.1038/s41587-023-01773-0 · External reference
Epitope identification from fixed-complexity random-sequence peptide microarrays
10.1074/mcp.m114.043513 · 2015 · External reference
A general approach for predicting protein epitopes targeted by antibody repertoires using whole proteomes
10.1371/journal.pone.0217668 · 2019 · External reference
10.1016/j.jim.2021.113178
10.1016/j.jim.2021.113178 · External reference
Embedded-AMP: a multi-thread computational method for the systematic identification of antimicrobial peptides embedded in proteome sequences
2023 · External reference
Absent sequences: nullomers and primes
2007 · External reference
10.1093/bioinformatics/btv189
10.1093/bioinformatics/btv189 · External reference
Safeguarding forensic DNA reference samples with nullomer barcodes
10.1016/j.jflm.2013.02.003 · 2013 · External reference
10.1093/nar/gkab139
10.1093/nar/gkab139 · External reference
Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution
10.1186/s13059-021-02459-z · 2021 · External reference
10.1371/journal.pone.0164540
10.1371/journal.pone.0164540 · External reference
On finding minimal absent words
10.1186/1471-2105-10-137 · 2009 · External reference
Linear-time computation of minimal absent words using suffix array
10.1186/s12859-014-0388-9 · 2014 · External reference
Minimal absent words in prokaryotic and eukaryotic genomes
10.1371/journal.pone.0016065 · 2011 · External reference
Negative information for building phylogenies. Recent Pat
10.2174/1872215611307020007 · 2013 · External reference
Minimal absent words in four human genome assemblies
10.1371/journal.pone.0029344 · 2011 · External reference
Codon number shapes peptide redundancy in the universal proteome composition
10.1016/j.peptides.2009.06.035 · 2009 · External reference
kmerDB: a database encompassing the set of genomic and proteomic sequence information for each species
2023 · External reference
Quasi-prime peptides: identification of the shortest peptide sequences unique to a species
10.1093/nargab/lqad039 · 2023 · External reference
Nucleic Quasi-Primes: Identification of the Shortest Unique Oligonucleotide Sequences in a Species
2023 · External reference
Nullomers: really a matter of natural selection?
10.1371/journal.pone.0001022 · 2007 · External reference
Preferential nucleosome occupancy at high values of DNA helical rise
10.1093/dnares/dsr043 · 2012 · External reference
Sequence-dependent DNA helical rise and nucleosome stability
10.1186/1471-2199-10-105 · 2009 · External reference
Using minimal absent words to build phylogeny
10.1016/j.tcs.2012.04.031 · 2012 · External reference
10.1093/bioinformatics/btaa686
10.1093/bioinformatics/btaa686 · External reference
Correlating low-similarity peptide sequences and allergenic epitopes
10.2174/138161208783413257 · 2008 · External reference
Sequence uniqueness and sequence variability as modulating factors of human anti-HCV humoral immune response
10.1007/s00262-008-0456-y · 2008 · External reference
Immunogenicity in peptide-immunotherapy: from self/nonself to similar/dissimilar sequences
10.1007/978-0-387-09789-3_15 · 2008 · External reference
Immunogenically optimized peptides derived from natural mutants of HIV CTL epitopes and peptide combinatorial libraries
10.1002/bip.21020 · 2008 · External reference
The farther the better: Investigating how distance from human self affects the propensity of a peptide to be presented on cell surface by MHC class I molecules, the case of Trypanosoma cruzi
10.1371/journal.pone.0243285 · 2020 · External reference
10.1110/ps.073067607
10.1110/ps.073067607 · External reference
Potential implications of availability of short amino acid sequences in proteins: an old and new approach to protein decoding and design
10.1016/s1387-2656(08)00004-5 · 2008 · External reference
Pentamers not found in the universal proteome can enhance antigen specific immune responses and adjuvant vaccines
10.1371/journal.pone.0043802 · 2012 · External reference
In the search of potential epitopes for Wuhan seafood market pneumonia virus using high order nullomers
10.1016/j.jim.2020.112787 · 2020 · External reference
10.2217/nnm-2020-0220
10.2217/nnm-2020-0220 · External reference
Anti-cancer peptide-based therapeutic strategies in solid tumors
10.1186/s11658-022-00332-w · 2022 · External reference
Nullomer peptide increases immune cell infiltration and reduces tumor metabolism in triple negative breast cancer mouse model
2023 · External reference
keeSeek: searching distant non-existing words in genomes for PCR-based applications
10.1093/bioinformatics/btu312 · 2014 · External reference
Unique peptide signatures of SARS-CοV-2 virus against human proteome reveal variants’ immune escape and infectiveness
10.1016/j.heliyon.2022.e09222 · 2022 · External reference
Uniquome: construction and decoding of a novel proteomic atlas that contains new peptide entities
2024 · External reference
10.1016/j.ygeno.2017.06.007
10.1016/j.ygeno.2017.06.007 · External reference
Developments in algorithms for sequence alignment: a review
10.3390/biom12040546 · 2022 · External reference
Genome assembly in the telomere-to-telomere era
2024 · External reference
10.1101/gr.260604.119
10.1101/gr.260604.119 · External reference
Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets
10.1186/s12859-022-05103-0 · 2022 · External reference
Syncmers are more sensitive than minimizers for selecting conserved ‑mers in biological sequences
10.7717/peerj.10805 · 2021 · External reference
Effective sequence similarity detection with strobemers
10.1101/gr.275648.121 · 2021 · External reference
Efficient counting of k-mers in DNA sequences using a bloom filter
10.1186/1471-2105-12-333 · 2011 · External reference
CHTKC: a robust and efficient k-mer counting algorithm based on a lock-free chaining hash table
10.1093/bib/bbaa063 · 2020 · External reference
Compact and evenly distributed k-mer binning for genomic sequences
10.1093/bioinformatics/btab323 · 2021 · External reference
DSK: k-mer counting with very low memory usage
10.1093/bioinformatics/btt020 · 2013 · External reference
GECKO is a genetic algorithm to classify and explore high throughput sequencing data
10.1038/s42003-019-0456-9 · 2019 · External reference
Gerbil: a fast and memory-efficient k-mer counter with GPU-support
10.1186/s13015-017-0097-9 · 2017 · External reference
KAnalyze: a fast versatile pipelined k-mer toolkit
10.1093/bioinformatics/btu152 · 2014 · External reference
KCMBT: a k-mer counter based on multiple burst trees
10.1093/bioinformatics/btw345 · 2016 · External reference
KCOSS: an ultra-fast k-mer counter for assembled genome analysis
10.1093/bioinformatics/btab797 · 2022 · External reference
10.12688/f1000research.6924.1
10.12688/f1000research.6924.1 · External reference
Kmerator Suite: design of specific k-mer signatures and automatic metadata discovery in large RNA-seq datasets
10.1093/nargab/lqab058 · 2021 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
MSPKmerCounter: a fast and memory efficient approach for K-mer counting
2015 · External reference
10.1371/journal.pone.0163962
10.1371/journal.pone.0163962 · External reference
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes
10.1186/1471-2164-9-517 · 2008 · External reference
Turtle: identifying frequent k-mers with cache-efficient algorithms
10.1093/bioinformatics/btu132 · 2014 · External reference
Unresolved reference
2017 · External reference
10.1093/bioinformatics/btx153
10.1093/bioinformatics/btx153 · External reference
GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists
10.1186/s13742-015-0097-y · 2015 · External reference
10.1093/bioinformatics/btw663
10.1093/bioinformatics/btw663 · External reference
Optimizing k-mer size using a variant grid search to enhance de novo genome assembly
10.6026/97320630012036 · 2016 · External reference
KmerStream: streaming algorithms for k-mer abundance estimation
10.1093/bioinformatics/btu713 · 2014 · External reference
ntCard: a streaming algorithm for cardinality estimation in genomics data
10.1093/bioinformatics/btw832 · 2017 · External reference
DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies
10.1186/s12864-019-5996-3 · 2019 · External reference
Improved representation of sequence bloom trees
10.1093/bioinformatics/btz662 · 2020 · External reference
KmerGO: A Tool to Identify Group-Specific Sequences With k-mers
10.3389/fmicb.2020.02067 · 2020 · External reference
Unresolved reference
2016 · External reference
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
10.1016/j.cels.2018.05.021 · 2018 · External reference
MetaGraph: Indexing and Analysing Nucleotide Archives at Petabase-scale
2020 · External reference
Scalable sequence database search using partitioned aggregated Bloom comb trees
10.1093/bioinformatics/btad225 · 2023 · External reference
RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly
10.1093/bioinformatics/btx771 · 2018 · External reference
Fast search of thousands of short-read sequencing experiments
10.1038/nbt.3442 · 2016 · External reference
SeqOthello: querying RNA-seq experiments at scale
10.1186/s13059-018-1535-9 · 2018 · External reference
Sparse and skew hashing of K-mers
10.1093/bioinformatics/btac245 · 2022 · External reference
Toward fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics
10.1093/bioinformatics/bty641 · 2018 · External reference
10.1073/pnas.1017351108
10.1073/pnas.1017351108 · External reference
10.1186/s13059-020-02135-8
10.1186/s13059-020-02135-8 · External reference
10.1101/gr.215087.116
10.1101/gr.215087.116 · External reference
10.1038/ng.1028
10.1038/ng.1028 · External reference
Unresolved reference
2023 · External reference
10.1093/bioinformatics/btv033
10.1093/bioinformatics/btv033 · External reference
10.1093/bioinformatics/bty266
10.1093/bioinformatics/bty266 · External reference
10.1186/s13059-018-1540-z
10.1186/s13059-018-1540-z · External reference
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2019 · External reference
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