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References from Developing the PIP-eco: An integrated genomic pipeline for identification and characterization of Escherichia coli pathotypes encompassing hybrid forms. Local targets link to admitted publications; unresolved targets remain external evidence.
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The impact of media, phylogenetic classification, and E. coli pathotypes on biofilm formation in extraintestinal and commensal E. coli from humans and animals
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Novel multiplex real-time PCR assays reveal a high prevalence of diarrhoeagenic Escherichia coli pathotypes in healthy and diarrhoeal children in the south of Vietnam
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Multiplex PCR assays for the detection of one hundred and thirty seven serogroups of shiga toxin-producing escherichia coli associated with cattle
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2012 · External reference
Pathotypic and phylogenetic study of diarrheagenic Escherichia coli and uropathogenic E. coli using multiplex polymerase chain reaction
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Development of a multiplex PCR assay for detection of Shiga toxin-producing Escherichia coli, enterohemorrhagic E. coli, and enteropathogenic E. coli strains
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2024 · External reference
Pathotyping Escherichia coli by using miniaturized DNA microarrays
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Diversity of hybrid- and hetero-pathogenic Escherichia coli and their potential implication in more severe diseases
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10.1371/journal.pone.0022751 · 2011 · External reference
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1998 · External reference
Pathogenicity islands of extraintestinal Escherichia coli
1999 · External reference
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10.1186/s13059-020-02090-4 · 2020 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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10.1093/nar/gkab301 · 2021 · External reference
Origin and evolution of hybrid shiga toxin-producing and uropathogenic escherichia coli strains of sequence type 141
2019 · External reference
Whole genome sequence-based characterisation of Shiga toxin-producing Escherichia coli isolated from game meat originating from several European countries
10.1038/s41598-023-30333-4 · 2023 · External reference
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10.1093/molbev/mss163 · 2012 · External reference
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2010 · External reference
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High frequency of hybrid Escherichia coli strains with combined Intestinal Pathogenic Escherichia coli (IPEC) and extraintestinal pathogenic escherichia coli (ExPEC) virulence factors isolated from human faecal samples
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Molecular characterization and comparative genomics of clinical hybrid shiga toxin-producing and enterotoxigenic Escherichia coli (STEC/ETEC) strains in Sweden
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Characterization of diarreaghenic Escherichia coli strains isolated from healthy donors, including a triple hybrid strain
10.3390/antibiotics11070833 · 2022 · External reference
Molecular epidemiology and presence of hybrid pathogenic Escherichia coli among Isolates from community-acquired urinary tract infection
2022 · External reference
Frequency and diversity of hybrid Escherichia coli strains isolated from urinary tract infections
2021 · External reference
Evolution of diarrheagenic Escherichia coli pathotypes in India
10.4103/jlp.jlp_58_19 · 2019 · External reference
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ibeA, a virulence factor of avian pathogenic Escherichia coli
10.1099/mic.0.27809-0 · 2005 · External reference
Diffusely adherent Escherichia coli strains expressing Afa/Dr adhesins (Afa/Dr DAEC): hitherto unrecognized pathogens
10.1111/j.1574-6968.2006.00144.x · 2006 · External reference
Variants of eae and stx genes of atypical enteropathogenic Escherichia coli and non-O157 Shiga toxin-producing Escherichia coli from calves
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Specific roles of the iroBCDEN genes in virulence of an avian pathogenic Escherichia coli O78 strain and in production of salmochelins
10.1128/iai.00455-08 · 2008 · External reference
Autoactivation of the AggR regulator of enteroaggregative Escherichia coli in vitro and in vivo
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Uropathogenic Escherichia coli pathogenicity islands and other ExPEC virulence genes may contribute to the genome variability of enteroinvasive E. coli
10.1186/s12866-017-0979-5 · 2017 · External reference
Escherichia coli B2 phylogenetic subgroups in the infant gut microbiota: predominance of uropathogenic lineages in swedish infants and enteropathogenic lineages in Pakistani infants
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Insights into the acquisition of the pks island and production of colibactin in the Escherichia coli population
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Evolutionary and functional history of the Escherichia coli K1 capsule
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Molecular analysis of enteropathogenic Escherichia coli (EPEC) isolates from healthy food-producing animals and humans with diarrhoea
10.1111/zph.13007 · 2023 · External reference
Epistatic interactions between the high pathogenicity island and other iron uptake systems shape Escherichia coli extra-intestinal virulence
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Diffusible signal factors (DSFs) bind and repress VirF, the leading virulence activator of Shigella flexneri
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