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References from Machine learning and network analysis with focus on the biofilm in Staphylococcus aureus. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1080/21505594.2021.1878688
10.1080/21505594.2021.1878688 · External reference
10.1016/j.chom.2019.06.002
10.1016/j.chom.2019.06.002 · External reference
10.1038/nrmicro821
10.1038/nrmicro821 · External reference
Differential thiol-based switches jump-start Vibrio cholerae pathogenesis
10.1016/j.celrep.2015.12.038 · 2016 · External reference
Strategy to combat biofilms: a focus on biofilm dispersal enzymes
10.1038/s41522-023-00427-y · 2023 · External reference
10.1128/aem.69.9.5079-5088.2003
10.1128/aem.69.9.5079-5088.2003 · External reference
10.1128/msystems.00480-22
10.1128/msystems.00480-22 · External reference
GltS regulates biofilm formation in methicillin-resistant Staphylococcus aureus
10.1038/s42003-022-04239-2 · 2022 · External reference
10.1186/s13059-017-1252-9
10.1186/s13059-017-1252-9 · External reference
WGCNA: an R package for weighted correlation network analysis
10.1186/1471-2105-9-559 · 2008 · External reference
10.1016/j.cell.2023.01.035
10.1016/j.cell.2023.01.035 · External reference
10.1093/nar/gkv279
10.1093/nar/gkv279 · External reference
10.1093/nar/gkab1053
10.1093/nar/gkab1053 · External reference
Role of Staphylococcus aureus formate metabolism during prosthetic joint infection
10.1128/iai.00428-22 · 2022 · External reference
GltS regulates biofilm formation in methicillin-resistant Staphylococcus aureus
10.1038/s42003-022-04239-2 · 2022 · External reference
A global transcriptomic analysis of Staphylococcus aureus biofilm formation across diverse clonal lineages
2021 · External reference
The de novo Purine Biosynthesis pathway is the only commonly regulated cellular pathway during biofilm formation in TSB-Based Medium in Staphylococcus aureus and Enterococcus faecalis
10.1128/spectrum.00804-21 · 2021 · External reference
10.1038/nrg2934
10.1038/nrg2934 · External reference
10.1038/nmeth.4197
10.1038/nmeth.4197 · External reference
Misuse of RPKM or TPM normalization when comparing across samples and sequencing protocols
10.1261/rna.074922.120 · 2020 · External reference
10.1093/nar/gkp919
10.1093/nar/gkp919 · External reference
BBSdb, an open resource for bacterial biofilm-associated proteins
10.3389/fcimb.2024.1428784 · 2024 · External reference
The Gene Ontology Consortium. The gene ontology resource: 20 years and still GOing strong
10.1093/nar/gky1055 · 2019 · External reference
Goto S. KEGG: kyoto encyclopedia of genes and genomes
10.1093/nar/28.1.27 · 2000 · External reference
Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus
10.1073/pnas.1517952112 · 2015 · External reference
Nucleotide sequence of the Staphylococcus aureus gyrB-gyrA locus encoding the DNA gyrase A and B proteins
10.1128/jb.174.5.1596-1603.1992 · 1992 · External reference
Dual targeting DNA gyrase B (GyrB) and topoisomerse IV (ParE) inhibitors: a review
10.1016/j.bioorg.2015.07.004 · 2015 · External reference
Differentiation of clinical Mycobacterium tuberculosis complex isolates by their GyrB polymorphism
10.4103/0255-0857.58724 · 2010 · External reference
Identification of Staphylococcus spp. and detection of mecA by an oligonucleotide array
10.1016/j.diagmicrobio.2016.06.003 · 2016 · External reference
10.3390/microorganisms11030700
10.3390/microorganisms11030700 · External reference
Nucleotide sequence of the Staphylococcus aureus RNA polymerase rpoB gene and comparison of its predicted amino acid sequence with those of other bacteria
10.1016/0167-4781(95)00054-k · 1995 · External reference
High rate of macrolide resistance in Staphylococcus aureus strains from patients with cystic fibrosis reveals high proportions of hypermutable strains
10.1086/374937 · 2003 · External reference
10.1038/s41568-018-0016-5
10.1038/s41568-018-0016-5 · External reference
Analysis of super-enhancer using machine learning and its application to medical biology
10.1093/bib/bbad107 · 2023 · External reference
Recursive feature elimination for biomarker discovery in resting-state functional connectivity
2016 · External reference
Structural and functional analysis of urease accessory protein E from vancomycin-resistance Staphylococcus aureus MU50 strain
10.2174/0929866530666230801163340 · 2023 · External reference
AraC-type regulator Rbf controls the Staphylococcus epidermidis biofilm phenotype by negatively regulating the icaADBC repressor SarR
10.1128/jb.00374-16 · 2016 · External reference
A comprehensive coexpression network analysis in vibrio cholerae
10.1128/msystems.00550-20 · 2020 · External reference
Phosphoenolpyruvate phosphotransferase system components positively regulate Klebsiella biofilm formation
10.1016/j.jmii.2017.01.007 · 2018 · External reference
The phosphoenolpyruvate phosphotransferase system regulates Vibrio cholerae biofilm formation through multiple independent pathways
10.1128/jb.00213-10 · 2010 · External reference
The type VII secretion system protects Staphylococcus aureus against antimicrobial host fatty acids
10.1038/s41598-020-71653-z · 2020 · External reference
10.1111/mmi.15115
10.1111/mmi.15115 · External reference
Substrate Interaction with the EssC coupling protein of the type VIIb secretion system
10.1128/jb.00646-19 · 2020 · External reference
10.1016/j.mib.2013.01.002
10.1016/j.mib.2013.01.002 · External reference
10.1093/nar/gkac1000
10.1093/nar/gkac1000 · External reference
10.1111/mmi.13634
10.1111/mmi.13634 · External reference
Mr.Vc v2: An updated version of database with increased data of transcriptome and experimental validated interactions
10.3389/fmicb.2022.1047259 · 2022 · External reference
Microarray, IPA and GSEA analysis in mice models
10.21769/bioprotoc.2999 · 2018 · External reference
ClpP participates in stress tolerance, biofilm formation, antimicrobial tolerance, and virulence of Enterococcus faecalis
10.1186/s12866-020-1719-9 · 2020 · External reference
The NagY regulator: A member of the BglG/SacY antiterminator family conserved in Enterococcus faecalis and involved in virulence
10.3389/fmicb.2022.1070116 · 2023 · External reference
The ATP-dependent protease ClpP inhibits biofilm formation by regulating agr and cell wall hydrolase Sle1 in Staphylococcus aureus
10.3389/fcimb.2017.00181 · 2017 · External reference
The fusaric acid derivative qy17 inhibits Staphylococcus haemolyticus by disrupting biofilm formation and the stress response via altered gene expression
10.3389/fmicb.2022.822148 · 2022 · External reference
Biofilm formation and prevalence of adhesion genes among Staphylococcus aureus isolates from different food sources
10.1002/mbo3.946 · 2020 · External reference
Biofilm systems as tools in biotechnological production
10.1007/s00253-019-09869-x · 2019 · External reference
10.1038/s41579-022-00791-0
10.1038/s41579-022-00791-0 · External reference
10.1002/sim.9546
10.1002/sim.9546 · External reference
