Research graph

References

References from Integrating AlphaFold pLDDT Scores into CABS-flex for enhanced protein flexibility simulations. Local targets link to admitted publications; unresolved targets remain external evidence.

10.1038/s41586-021-03819-2

10.1038/s41586-021-03819-2 · External reference

10.1038/s41589-024-01638-w

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10.1016/j.cell.2021.07.020

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10.1002/prot.26471

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10.1002/prot.26652

10.1002/prot.26652 · External reference

In‐silico identification of Tyr232 in AMPKα2 as a dephosphorylation site for the protein tyrosine phosphatase PTP‐PEST

10.1002/prot.26470 · 2023 · External reference

AlphaFold2 modeling and molecular dynamics simulations of an intrinsically disordered protein

10.1371/journal.pone.0301866 · Admitted local publication

Improving AlphaFold predicted contacts for alpha-helical transmembrane proteins using structural features

10.3390/ijms25105247 · 2024 · External reference

10.1021/ct300854w

10.1021/ct300854w · External reference

CABS-flex: server for fast simulation of protein structure fluctuations

10.1093/nar/gkt332 · 2013 · External reference

10.1093/nar/gky356

10.1093/nar/gky356 · External reference

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility

10.1093/bioinformatics/bty685 · 2019 · External reference

Structure prediction of linear and cyclic peptides using CABS-flex

10.1093/bib/bbae003 · 2024 · External reference

Exploring protein functions from structural flexibility using CABS‐flex modeling

10.1002/pro.5090 · 2024 · External reference

10.1093/nar/gkad1084

10.1093/nar/gkad1084 · External reference

10.1021/acs.chemrev.6b00163

10.1021/acs.chemrev.6b00163 · External reference

Computational reconstruction of atomistic protein structures from coarse-grained models

10.1016/j.csbj.2019.12.007 · Admitted local publication

10.1093/bioinformatics/btu184

10.1093/bioinformatics/btu184 · External reference

10.1038/s41592-019-0686-2

10.1038/s41592-019-0686-2 · External reference

10.1074/jbc.m109.082099

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Design and characterization of protein E-PilA, a candidate fusion antigen for nontypeable haemophilus influenzae vaccine

10.1128/iai.00022-19 · 2019 · External reference

Structural insights into the bacterial carbon–phosphorus lyase machinery

10.1038/nature14683 · 2015 · External reference

Structural and functional studies of pyruvate carboxylase regulation by cyclic di-AMP in lactic acid bacteria

2017 · External reference