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References from Mapping the 3D genome architecture. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/nrg3454
10.1038/nrg3454 · External reference
10.1016/j.semcdb.2018.07.004
10.1016/j.semcdb.2018.07.004 · External reference
Higher-order inter-chromosomal hubs shape 3D genome organization in the nucleus
10.1016/j.cell.2018.05.024 · 2018 · External reference
10.1016/j.febslet.2015.05.025
10.1016/j.febslet.2015.05.025 · External reference
10.1038/s41576-019-0195-2
10.1038/s41576-019-0195-2 · External reference
10.1038/nature13986
10.1038/nature13986 · External reference
10.1126/science.1067799
10.1126/science.1067799 · External reference
10.1038/ng1896
10.1038/ng1896 · External reference
Chromosome conformation capture carbon copy technology
2007 · External reference
10.1016/j.ymeth.2012.05.001
10.1016/j.ymeth.2012.05.001 · External reference
10.1016/j.cell.2014.11.021
10.1016/j.cell.2014.11.021 · External reference
10.1016/j.ymeth.2014.10.031
10.1016/j.ymeth.2014.10.031 · External reference
An Overview of Methods for Reconstructing 3-D Chromosome and Genome Structures from Hi-C Data
10.1186/s12575-019-0094-0 · 2019 · External reference
10.1038/s41467-018-03113-2
10.1038/s41467-018-03113-2 · External reference
10.1093/nar/gkab1235
10.1093/nar/gkab1235 · External reference
10.1038/nmeth.1923
10.1038/nmeth.1923 · External reference
10.1371/journal.pcbi.1012164
10.1371/journal.pcbi.1012164 · External reference
10.1093/bioinformatics/btp324
10.1093/bioinformatics/btp324 · External reference
10.1093/bioinformatics/btz436
10.1093/bioinformatics/btz436 · External reference
snHiC: a complete and simplified snakemake pipeline for grouped Hi-C data analysis
10.1093/bioadv/vbad080 · 2023 · External reference
10.1186/s13059-020-02215-9
10.1186/s13059-020-02215-9 · External reference
10.1186/s13059-015-0831-x
10.1186/s13059-015-0831-x · External reference
10.1093/nar/gky504
10.1093/nar/gky504 · External reference
10.12688/f1000research.7334.1
10.12688/f1000research.7334.1 · External reference
HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization
10.1093/bioinformatics/btac442 · 2022 · External reference
10.1016/j.cels.2016.07.002
10.1016/j.cels.2016.07.002 · External reference
Analysis methods for studying the 3D architecture of the genome
10.1186/s13059-015-0745-7 · 2015 · External reference
10.1186/s13059-015-0831-x
10.1186/s13059-015-0831-x · External reference
10.1093/bioinformatics/bts570
10.1093/bioinformatics/bts570 · External reference
Effective normalization for copy number variation in Hi-C data
10.1186/s12859-018-2256-5 · 2018 · External reference
10.1038/ng.947
10.1038/ng.947 · External reference
10.1038/nmeth.2148
10.1038/nmeth.2148 · External reference
A fast algorithm for matrix balancing
10.1093/imanum/drs019 · 2012 · External reference
10.1093/bioinformatics/btx152
10.1093/bioinformatics/btx152 · External reference
Removing unwanted variation between samples in Hi-C experiments
10.1093/bib/bbae217 · 2024 · External reference
10.2144/btn-2019-0105
10.2144/btn-2019-0105 · External reference
10.1093/nargab/lqab040
10.1093/nargab/lqab040 · External reference
10.1016/j.cels.2015.07.012
10.1016/j.cels.2015.07.012 · External reference
Building haplotype-resolved 3D genome maps of chicken skeletal muscle
10.1002/advs.202305706 · 2024 · External reference
Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse
10.1101/gr.1736803 · 2003 · External reference
10.1038/s41576-023-00638-1
10.1038/s41576-023-00638-1 · External reference
The shape of chromatin: insights from computational recognition of geometric patterns in Hi-C data
10.1093/bib/bbad302 · 2023 · External reference
10.1038/nature11082
10.1038/nature11082 · External reference
10.1038/s41588-019-0561-1
10.1038/s41588-019-0561-1 · External reference
10.1038/s41586-020-2151-x
10.1038/s41586-020-2151-x · External reference
10.1016/j.celrep.2016.10.061
10.1016/j.celrep.2016.10.061 · External reference
10.1016/j.cell.2018.09.002
10.1016/j.cell.2018.09.002 · External reference
10.1038/s41556-019-0273-x
10.1038/s41556-019-0273-x · External reference
Software tools for visualizing Hi-C data
10.1186/s13059-017-1161-y · 2017 · External reference
10.1016/j.gpb.2018.06.006
10.1016/j.gpb.2018.06.006 · External reference
10.1186/s13059-018-1486-1
10.1186/s13059-018-1486-1 · External reference
10.1093/bioinformatics/btu082
10.1093/bioinformatics/btu082 · External reference
10.1038/nmeth1009-690
10.1038/nmeth1009-690 · External reference
10.1093/nar/gkac238
10.1093/nar/gkac238 · External reference
10.1186/s13059-018-1519-9
10.1186/s13059-018-1519-9 · External reference
dcHiC detects differential compartments across multiple Hi-C datasets
10.1038/s41467-022-34626-6 · 2022 · External reference
10.1093/bioinformatics/btz362
10.1093/bioinformatics/btz362 · External reference
10.1101/gr.160374.113
10.1101/gr.160374.113 · External reference
10.1038/s41596-019-0273-0
10.1038/s41596-019-0273-0 · External reference
10.1186/s13059-020-02167-0
10.1186/s13059-020-02167-0 · External reference
10.1038/s41467-022-29258-9
10.1038/s41467-022-29258-9 · External reference
10.1186/s13059-015-0767-1
10.1186/s13059-015-0767-1 · External reference
10.1093/bioinformatics/bts521
10.1093/bioinformatics/bts521 · External reference
HiBrowser: an interactive and dynamic browser for synchronous Hi-C data visualization
2023 · External reference
HiCeekR: a novel Shiny app for Hi-C data analysis
10.3389/fgene.2019.01079 · 2019 · External reference
10.1016/j.cell.2015.05.048
10.1016/j.cell.2015.05.048 · External reference
Characterizing chromatin interactions of regulatory elements and nucleosome positions, using Hi-C, Micro-C, and promoter capture Micro-C
10.1186/s13072-022-00473-4 · 2022 · External reference
Ultrastructural details of mammalian chromosome architecture
10.1016/j.molcel.2020.03.003 · 2020 · External reference
10.1038/nature12593
10.1038/nature12593 · External reference
10.1016/j.heliyon.2022.e11023
10.1016/j.heliyon.2022.e11023 · External reference
10.1038/nprot.2015.127
10.1038/nprot.2015.127 · External reference
10.1016/j.ymeth.2019.09.012
10.1016/j.ymeth.2019.09.012 · External reference
10.1038/nmeth.4155
10.1038/nmeth.4155 · External reference
3D chromatin structures of mature gametes and structural reprogramming during mammalian embryogenesis
2017 · External reference
10.1126/science.aat5641
10.1126/science.aat5641 · External reference
10.1038/s41592-023-01978-w
10.1038/s41592-023-01978-w · External reference
Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues
2024 · External reference
10.1101/gad.251694.114
10.1101/gad.251694.114 · External reference
10.1038/nature21411
10.1038/nature21411 · External reference
Cell cycle dynamics of lamina-associated DNA
10.15252/embr.202050636 · 2020 · External reference
10.1038/s41592-023-01903-1
10.1038/s41592-023-01903-1 · External reference
10.1038/s41592-021-01135-1
10.1038/s41592-021-01135-1 · External reference
10.1126/science.aaf8084
10.1126/science.aaf8084 · External reference
10.1038/s41586-019-0949-1
10.1038/s41586-019-0949-1 · External reference
ChIA-DropBox: a novel analysis and visualization pipeline for multiplex chromatin interactions
2019 · External reference
10.1038/s41587-021-00998-1
10.1038/s41587-021-00998-1 · External reference
10.1038/ng.3286
10.1038/ng.3286 · External reference
Capture Hi-C identifies putative target genes at 33 breast cancer risk loci
10.1038/s41467-018-03411-9 · 2018 · External reference
10.1038/nature08497
10.1038/nature08497 · External reference
10.1038/nmeth.3999
10.1038/nmeth.3999 · External reference
10.1038/nmeth.4583
10.1038/nmeth.4583 · External reference
10.1186/s13059-018-1430-4
10.1186/s13059-018-1430-4 · External reference
HiCoP, a simple and robust method for detecting interactions of regulatory regions
10.1186/s13072-020-00348-6 · 2020 · External reference
HiCAR is a robust and sensitive method to analyze open-chromatin-associated genome organization
2022 · External reference
10.1038/s41592-018-0107-y
10.1038/s41592-018-0107-y · External reference
10.1126/science.adg3797
10.1126/science.adg3797 · External reference
10.1038/s41592-019-0547-z
10.1038/s41592-019-0547-z · External reference
10.1038/s41592-019-0502-z
10.1038/s41592-019-0502-z · External reference
10.1038/s41594-023-01066-9
10.1038/s41594-023-01066-9 · External reference
10.1038/s41592-024-02239-0
10.1038/s41592-024-02239-0 · External reference
10.1038/s41592-024-02205-w
10.1038/s41592-024-02205-w · External reference
