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References from AI-driven multi-omics integration for multi-scale predictive modeling of genotype-environment-phenotype relationships. Local targets link to admitted publications; unresolved targets remain external evidence.
10.2307/2408649
10.2307/2408649 · External reference
10.1176/appi.ajp.160.4.636
10.1176/appi.ajp.160.4.636 · External reference
Multi-omics approaches to disease
10.1186/s13059-017-1215-1 · 2017 · External reference
Multi-omics data integration considerations and study design for biological systems and disease
10.1039/d0mo00041h · 2021 · External reference
10.3390/cells12151970
10.3390/cells12151970 · External reference
10.1038/s41576-023-00586-w
10.1038/s41576-023-00586-w · External reference
10.1038/s41580-023-00615-w
10.1038/s41580-023-00615-w · External reference
10.1038/s41576-023-00580-2
10.1038/s41576-023-00580-2 · External reference
10.1038/s41590-023-01678-9
10.1038/s41590-023-01678-9 · External reference
10.1126/science.abq4964
10.1126/science.abq4964 · External reference
10.1038/s41587-021-01182-1
10.1038/s41587-021-01182-1 · External reference
10.1101/gr.275224.121
10.1101/gr.275224.121 · External reference
10.1038/s41467-023-41855-w
10.1038/s41467-023-41855-w · External reference
10.1038/s41422-024-01034-y
10.1038/s41422-024-01034-y · External reference
Toward universal cell embeddings: integrating single-cell rna-seq datasets across species with Saturn
2024 · External reference
10.1038/nrd.2017.111
10.1038/nrd.2017.111 · External reference
10.1038/s41573-022-00472-w
10.1038/s41573-022-00472-w · External reference
Review the cancer genome atlas (tcga): an immeasurable source of knowledge
10.5114/wo.2014.47136 · 2015 · External reference
10.1093/nar/gkx1063
10.1093/nar/gkx1063 · External reference
10.1093/nar/gkz1023
10.1093/nar/gkz1023 · External reference
10.1016/j.cell.2017.06.010
10.1016/j.cell.2017.06.010 · External reference
The cancer cell line encyclopedia enables predictive modelling of anticancer drug sensitivity
10.1038/nature11003 · 2012 · External reference
Next-generation characterization of the cancer cell line encyclopedia
10.1038/s41586-019-1186-3 · 2019 · External reference
Systematic identification of genomic markers of drug sensitivity in cancer cells
10.1038/nature11005 · 2012 · External reference
10.1016/j.cell.2016.06.017
10.1016/j.cell.2016.06.017 · External reference
10.1016/j.cell.2013.08.003
10.1016/j.cell.2013.08.003 · External reference
10.1158/2159-8290.cd-15-0235
10.1158/2159-8290.cd-15-0235 · External reference
scperturb: harmonized single-cell perturbation data
2024 · External reference
10.1126/science.aax6234
10.1126/science.aax6234 · External reference
10.1093/nar/gkx911
10.1093/nar/gkx911 · External reference
10.1093/nar/gkab1026
10.1093/nar/gkab1026 · External reference
Decrypting the molecular basis of cellular drug phenotypes by dose-resolved expression proteomics
2024 · External reference
10.1126/science.ade3925
10.1126/science.ade3925 · External reference
10.1038/s41592-018-0229-2
10.1038/s41592-018-0229-2 · External reference
10.15252/msb.20209620
10.15252/msb.20209620 · External reference
10.1038/s41592-020-01050-x
10.1038/s41592-020-01050-x · External reference
Cobolt: integrative analysis of multimodal single-cell sequencing data
10.1186/s13059-021-02556-z · 2021 · External reference
10.1038/s41592-023-01909-9
10.1038/s41592-023-01909-9 · External reference
A deep generative model for multi-view profiling of single-cell rna-seq and atac-seq data
10.1186/s13059-021-02595-6 · 2022 · External reference
10.1038/s41587-022-01284-4
10.1038/s41587-022-01284-4 · External reference
Disentanglement of single-cell data with biolord
2024 · External reference
Predicting cellular responses to novel drug perturbations at a single-cell resolution
2022 · External reference
scgpt: toward building a foundation model for single-cell multi-omics using generative AI
2024 · External reference
Unresolved reference
2024 · External reference
Toward universal cell embeddings: integrating single-cell rna-seq datasets across species with Saturn
2024 · External reference
Unresolved reference
2023 · External reference
Unresolved reference
2022 · External reference
10.1038/s41467-020-20249-2
10.1038/s41467-020-20249-2 · External reference
10.1016/j.ccell.2022.07.004
10.1016/j.ccell.2022.07.004 · External reference
Deep structure integrative representation of multi-omics data for cancer subtyping
10.1093/bioinformatics/btac345 · 2022 · External reference
Deep latent space fusion for adaptive representation of heterogeneous multi-omics data
10.1093/bib/bbab600 · 2022 · External reference
Moma: a multi-task attention learning algorithm for multi-omics data interpretation and classification
10.1093/bioinformatics/btac080 · 2022 · External reference
10.1126/sciadv.adj0785
10.1126/sciadv.adj0785 · External reference
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Predicting transcriptional outcomes of novel multigene perturbations with gears
2023 · External reference
A foundation model for clinician-centered drug repurposing
2024 · External reference
10.1038/s41592-024-02341-3
10.1038/s41592-024-02341-3 · External reference
Bi-order multimodal integration of single-cell data
10.1186/s13059-022-02679-x · 2022 · External reference
10.1016/j.cell.2019.05.031
10.1016/j.cell.2019.05.031 · External reference
10.1038/s41587-019-0113-3
10.1038/s41587-019-0113-3 · External reference
Integration of spatial and single-cell data across modalities with weakly linked features
2023 · External reference
Uinmf performs mosaic integration of single-cell multi-omic datasets using nonnegative matrix factorization
10.1038/s41467-022-28431-4 · 2022 · External reference
10.1038/s41596-020-0391-8
10.1038/s41596-020-0391-8 · External reference
Mofa+: a statistical framework for comprehensive integration of multi-modal single-cell data
10.1186/s13059-020-02015-1 · 2020 · External reference
10.1038/nbt.4091
10.1038/nbt.4091 · External reference
10.1016/j.cell.2021.04.048
10.1016/j.cell.2021.04.048 · External reference
Dictionary learning for integrative, multimodal and scalable single-cell analysis
2023 · External reference
Multi-kernel linear mixed model with adaptive lasso for prediction analysis on high-dimensional multi-omics data
10.1093/bioinformatics/btz822 · 2020 · External reference
Multilevel heterogeneous omics data integration with kernel fusion
2020 · External reference
Pimkl: pathway-induced multiple kernel learning
10.1038/s41540-019-0086-3 · 2019 · External reference
10.1002/9781394257317.ch6
10.1002/9781394257317.ch6 · 2024 · External reference
10.1162/089976602760128018
10.1162/089976602760128018 · External reference
Unresolved reference
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Language models are few-shot learners
2020 · External reference
Unresolved reference
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Palm: scaling language modeling with pathways
2023 · External reference
Unresolved reference
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Unresolved reference
2021 · External reference
Transfer learning enables predictions in network biology
10.1038/s41586-023-06139-9 · 2023 · External reference
Unresolved reference
2023 · External reference
Unresolved reference
2023 · External reference
10.1126/science.ade2574
10.1126/science.ade2574 · External reference
Unresolved reference
2021 · External reference
10.1038/s41551-022-00942-x
10.1038/s41551-022-00942-x · External reference
Heterogeneous multi-layered network model for omics data integration and analysis
2020 · External reference
Polygenic adaptation: a unifying framework to understand positive selection
2020 · External reference
10.1038/nrg.2017.38
10.1038/nrg.2017.38 · External reference
10.1016/j.ajhg.2011.10.004
10.1016/j.ajhg.2011.10.004 · External reference
A cross-level information transmission network for hierarchical omics data integration and phenotype prediction from a new genotype
10.1093/bioinformatics/btab580 · 2022 · External reference
10.1016/j.cell.2019.04.016
10.1016/j.cell.2019.04.016 · External reference
Transynergy: mechanism-driven interpretable deep neural network for the synergistic prediction and pathway deconvolution of drug combinations
10.1371/journal.pcbi.1008653 · 2021 · External reference
10.1016/j.ajhg.2008.09.017
10.1016/j.ajhg.2008.09.017 · External reference
The anatomy of phenotype ontologies: principles, properties and applications
10.1093/bib/bbx035 · 2018 · External reference
Unresolved reference
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Integrated multi-omics for rapid rare disease diagnosis on a national scale
10.1038/s41591-023-02401-9 · 2023 · External reference
10.1007/s10462-023-10562-9
10.1007/s10462-023-10562-9 · External reference
Application of uncertainty quantification to artificial intelligence in healthcare: a review of last decade (2013–2023)
10.1016/j.compbiomed.2023.107441 · 2023 · External reference
10.1371/journal.pcbi.1010367
10.1371/journal.pcbi.1010367 · External reference
10.1371/journal.pcbi.1010851
10.1371/journal.pcbi.1010851 · External reference
Transformercpi: improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments
10.1093/bioinformatics/btaa524 · 2020 · External reference
Bacpi: a bi-directional attention neural network for compound–protein interaction and binding affinity prediction
10.1093/bioinformatics/btac035 · 2022 · External reference
Believe it or not: how much can we rely on published data on potential drug targets?
10.1038/nrd3439-c1 · 2011 · External reference
Raise standards for preclinical cancer research
10.1038/483531a · 2012 · External reference
Recommendations to enhance rigor and reproducibility in biomedical research
2020 · External reference
Hierarchical multi-omics data integration and modeling predict cell-specific chemical proteomics and drug responses
2023 · External reference
Unresolved reference
2024 · External reference
10.1038/s41586-021-03819-2
10.1038/s41586-021-03819-2 · External reference
10.1038/s41587-022-01618-2
10.1038/s41587-022-01618-2 · External reference
Chemical proteomics reveals the target landscape of 1,000 kinase inhibitors
2023 · External reference
10.1016/j.cbpa.2019.11.002
10.1016/j.cbpa.2019.11.002 · External reference
10.1038/s42003-024-06797-z
10.1038/s42003-024-06797-z · External reference
Deepreal: a deep learning powered multi-scale modeling framework for predicting out-of-distribution ligand-induced gpcr activity
10.1093/bioinformatics/btac154 · 2022 · External reference
Networks of networks–an introduction
10.1016/j.chaos.2015.03.016 · 2015 · External reference
10.1016/j.ijmm.2006.01.036
10.1016/j.ijmm.2006.01.036 · External reference
A roadmap for the development of human body digital twins
2024 · External reference
Unresolved reference
2023 · External reference
Digital twins for health: a scoping review
10.1038/s41746-024-01073-0 · 2024 · External reference