Research graph
References from Nanopore sequencing of protozoa: Decoding biological information on a string of biochemical molecules into human-readable signals. Local targets link to admitted publications; unresolved targets remain external evidence.
Futuristic methods in virus genome evolution using the third-generation DNA sequencing and artificial neural networks
2019 · External reference
Feature learning of virus genome evolution with the nucleotide skip-gram neural network
10.1177/1176934318821072 · 2019 · External reference
10.1016/j.ygeno.2008.07.001
10.1016/j.ygeno.2008.07.001 · External reference
10.1385/mb:17:1:73 · 2001 · Admitted local publication
10.1016/s0167-7799(00)01426-8
10.1016/s0167-7799(00)01426-8 · External reference
From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy
2018 · External reference
10.3390/applbiosci2030028
10.3390/applbiosci2030028 · External reference
10.3390/mi14020459
10.3390/mi14020459 · External reference
Characterization of individual polynucleotide molecules using a membrane channel
10.1073/pnas.93.24.13770 · 1996 · External reference
The oxford nanopore MinION: delivery of nanopore sequencing to the genomics community
2016 · External reference
10.1016/j.csbj.2023.03.038 · Admitted local publication
10.1056/nejmc2112090
10.1056/nejmc2112090 · External reference
10.1038/nature16996
10.1038/nature16996 · External reference
10.1126/science.abj6987
10.1126/science.abj6987 · External reference
10.1146/annurev-pathmechdis-031621-025153
10.1146/annurev-pathmechdis-031621-025153 · External reference
Salivarian trypanosomosis: a review of parasites involved, their global distribution and their interaction with the innate and adaptive mammalian host immune system
10.3389/fimmu.2018.02253 · 2018 · External reference
Chagas disease: Current perspectives on a forgotten disease
2018 · External reference
10.1126/science.1112642
10.1126/science.1112642 · External reference
10.1098/rsob.190182
10.1098/rsob.190182 · External reference
Keeping balance between genetic stability and plasticity at the telomere and subtelomere of Trypanosoma brucei
10.3389/fcell.2021.699639 · 2021 · External reference
10.1038/nrg3117
10.1038/nrg3117 · External reference
10.1146/annurev-genom-101722-103045
10.1146/annurev-genom-101722-103045 · External reference
10.1038/s41587-021-01108-x
10.1038/s41587-021-01108-x · External reference
10.1128/jcm.01822-19
10.1128/jcm.01822-19 · External reference
10.1038/nbt.4060
10.1038/nbt.4060 · External reference
10.1093/gigascience/giz043
10.1093/gigascience/giz043 · External reference
ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone
10.1186/s12915-021-01141-x · 2021 · External reference
10.1128/jcm.01315-19
10.1128/jcm.01315-19 · External reference
10.1016/j.chom.2016.05.002
10.1016/j.chom.2016.05.002 · External reference
Sequencing DNA with nanopores: troubles and biases
10.1371/journal.pone.0257521 · 2021 · External reference
Evaluation of Oxford nanopore’s MinION sequencing device for microbial whole genome sequencing applications
10.1038/s41598-018-29334-5 · 2018 · External reference
10.1093/bioinformatics/bty149
10.1093/bioinformatics/bty149 · External reference
10.1093/bioinformatics/bty191
10.1093/bioinformatics/bty191 · External reference
10.3390/s23156787
10.3390/s23156787 · External reference
Causalcall: Nanopore basecalling using a temporal convolutional network
10.3389/fgene.2019.01332 · 2019 · External reference
10.1093/gigascience/giy037
10.1093/gigascience/giy037 · External reference
Pair consensus decoding improves accuracy of neural network basecallers for nanopore sequencing
10.1186/s13059-020-02255-1 · 2021 · External reference
A comparison of methods for detecting DNA methylation from long-read sequencing of human genomes
10.1186/s13059-024-03207-9 · 2024 · External reference
Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group
10.1038/s41467-023-39892-6 · 2023 · External reference
Unified metagenomic method for rapid detection of microorganisms in clinical samples
2024 · External reference
Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies
10.3389/fmicb.2021.738284 · 2021 · External reference
Improving bacterial metagenomic research through long-read sequencing
10.3390/microorganisms12050935 · 2024 · External reference
Improved metagenomic analysis with Kraken 2
2019 · External reference
10.1101/gr.210641.116
10.1101/gr.210641.116 · External reference
10.1101/2023.12.14.571721
10.1101/2023.12.14.571721 · External reference
10.3390/v15071408
10.3390/v15071408 · External reference
10.1021/acs.analchem.2c02771
10.1021/acs.analchem.2c02771 · External reference
Rapid detection of high consequence and emerging viral pathogens in pigs
10.3389/fvets.2024.1341783 · 2024 · External reference
Kraken: ultrafast metagenomic sequence classification using exact alignments
2014 · External reference
10.1128/spectrum.00509-24
10.1128/spectrum.00509-24 · External reference
10.1038/s41586-023-06457-y
10.1038/s41586-023-06457-y · External reference
High resolution long-read telomere sequencing reveals dynamic mechanisms in aging and cancer
10.1038/s41467-024-48917-7 · 2024 · External reference
10.1038/s41586-023-05896-x
10.1038/s41586-023-05896-x · External reference
10.1038/s41587-019-0072-8
10.1038/s41587-019-0072-8 · External reference
10.1371/journal.pcbi.1005944
10.1371/journal.pcbi.1005944 · External reference
ReadBouncer: precise and scalable adaptive sampling for nanopore sequencing
10.1093/bioinformatics/btac223 · 2022 · External reference
Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family
10.1186/s40168-019-0637-2 · 2019 · External reference
Cultivation and description of Duncaniella dubosii sp. nov., Duncaniella freteri sp. nov. and emended description of the species Duncaniella muris
10.1099/ijsem.0.004137 · 2020 · External reference
The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota
2016 · External reference
Curtobacterium flaccumfaciens Septic Arthritis following puncture with a coxspur hawthorn thorn
10.1128/jcm.00340-11 · 2011 · External reference
The kinetoplast of trypanosomatids: from early studies of electron microscopy to recent advances in atomic force microscopy
10.1155/2018/9603051 · 2018 · External reference
10.1038/nbt.3423
10.1038/nbt.3423 · External reference
10.15252/emmm.202217282
10.15252/emmm.202217282 · External reference
Classification of brain tumors by nanopore sequencing of cell-free DNA from cerebrospinal fluid
10.1093/clinchem/hvad115 · 2023 · External reference
Single-molecule methylation profiles of cell-free DNA in cancer with nanopore sequencing
2023 · External reference
10.1038/s41564-023-01516-6
10.1038/s41564-023-01516-6 · External reference
Detection of hidden antibiotic resistance through real-time genomics
10.1038/s41467-024-49851-4 · 2024 · External reference
Detection of pathogens and antimicrobial resistance genes directly from urine samples in patients suspected of urinary tract infection by metagenomics nanopore sequencing: a large-scale multi-centre study
10.1002/ctm2.824 · 2023 · External reference
10.1016/j.watres.2022.119282
10.1016/j.watres.2022.119282 · External reference
SA. Artificially expanded genetic information system: a new base pair with an alternative hydrogen bonding pattern
10.1093/nar/gkl633 · 2006 · External reference
Whole-genome assembly of a hybrid Trypanosoma cruzi strain assembled with nanopore sequencing alone
10.1093/g3journal/jkae076 · 2024 · External reference
Molecular identification of trypanosomes in cattle in Malawi using PCR methods and nanopore sequencing: epidemiological implications for the control of human and animal trypanosomiases
10.1051/parasite/2020043 · 2020 · External reference
A review of the pangenome: how it affects our understanding of genomic variation, selection and breeding in domestic animals?
10.1186/s40104-023-00860-1 · 2023 · External reference
Unresolved reference
2019 · External reference
Replication
10.1038/nmeth.3091 · 2014 · External reference
