Research graph
References from Benchmarking strategies for CNV calling from whole genome bisulfite data in humans. Local targets link to admitted publications; unresolved targets remain external evidence.
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The diverse effects of complex chromosome rearrangements and chromothripsis in cancer development
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10.3390/ijms140715029 · External reference
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10.1038/nature08514
10.1038/nature08514 · External reference
MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data
10.1186/1471-2164-16-s12-s11 · 2015 · External reference
Inter- and intratumor DNA methylation heterogeneity associated with lymph node metastasis and prognosis of esophageal squamous cell carcinoma
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10.1038/nmeth.1363 · External reference
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10.1093/bioinformatics/btp394
10.1093/bioinformatics/btp394 · External reference
BSMAP: whole genome bisulfite sequence MAPping program
10.1186/1471-2105-10-232 · 2009 · External reference
Fast and memory-efficient mapping of short bisulfite sequencing reads using a two-letter alphabet
2021 · External reference
An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping
10.1186/s12859-018-2593-4 · 2019 · External reference
10.1016/j.csbj.2022.08.051 · Admitted local publication
Methylation profile of X-chromosome-related genes in male breast cancer
10.3389/fonc.2020.00784 · 2020 · External reference
BiSulfite bolt: a bisulfite sequencing analysis platform
2021 · External reference
10.1093/bioinformatics/btr167
10.1093/bioinformatics/btr167 · External reference
10.1038/nmeth.1923
10.1038/nmeth.1923 · External reference
WALT: fast and accurate read mapping for bisulfite sequencing
2016 · External reference
cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate
10.1093/nar/gks003 · 2012 · External reference
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10.1371/journal.pcbi.1004873 · External reference
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10.1093/bioinformatics/bts378 · External reference
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10.1093/bioinformatics/btp208 · External reference
Unresolved reference
External reference
Whole-genome CNV analysis: advances in computational approaches
10.3389/fgene.2015.00138 · 2015 · External reference
An integrated map of genetic variation from 1,092 human genomes
10.1038/nature11632 · 2012 · External reference
10.1093/bioinformatics/bty560
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10.1371/journal.pcbi.1004873 · External reference
10.1093/bioinformatics/btq033
10.1093/bioinformatics/btq033 · External reference
Association of CNVs with methylation variation
10.1038/s41525-020-00145-w · 2020 · External reference
The association between copy number aberration, DNA methylation and gene expression in tumor samples
10.1093/nar/gky131 · 2018 · External reference
DNA methylation epi-signature is associated with two molecularly and phenotypically distinct clinical subtypes of Phelan-McDermid syndrome
10.1186/s13148-020-00990-7 · 2021 · External reference
Dynamic Alu methylation during normal development, aging, and tumorigenesis
2014 · External reference
Tumor detection by analysis of both symmetric- and hemi-methylation of plasma cell-free DNA
10.1038/s41467-024-50471-1 · 2024 · External reference
Exome sequence read depth methods for identifying copy number changes
10.1093/bib/bbu027 · 2015 · External reference
10.1093/bioinformatics/bts535
10.1093/bioinformatics/bts535 · External reference
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10.1126/science.1149504 · External reference
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10.1101/gr.4565806 · External reference
Genome structural variation discovery and genotyping
10.1038/nrg2958 · 2011 · External reference
Evaluation of the performance of copy number variant prediction tools for the detection of deletions from whole genome sequencing data
10.1016/j.jbi.2019.103174 · 2019 · External reference
Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data
10.1186/s12864-019-6153-8 · 2019 · External reference
