Research graph
References from bindNode24: Competitive binding residue prediction with 60 % smaller model. Local targets link to admitted publications; unresolved targets remain external evidence.
Prediction of protein function from protein sequence and structure
10.1017/s0033583503003901 · 2003 · External reference
Unresolved reference
2002 · External reference
10.1016/j.drudis.2010.05.015
10.1016/j.drudis.2010.05.015 · External reference
10.1093/nar/gks966
10.1093/nar/gks966 · External reference
Protein embeddings and deep learning predict binding residues for various ligand classes
10.1038/s41598-021-03431-4 · 2021 · External reference
Protein embeddings predict binding residues in disordered regions
10.1038/s41598-024-64211-4 · 2024 · External reference
M-Ionic: prediction of metal-ion-binding sites from sequence using residue embeddings
10.1093/bioinformatics/btad782 · 2024 · External reference
UniProt: a hub for protein information
10.1093/nar/gku989 · 2015 · External reference
DeepSite: protein-binding site predictor using 3D-convolutional neural networks
10.1093/bioinformatics/btx350 · 2017 · External reference
GraphBind: protein structural context embedded rules learned by hierarchical graph neural networks for recognizing nucleic-acid-binding residues
2021 · External reference
10.1093/nar/gkae1029
10.1093/nar/gkae1029 · External reference
Conservation of hot spots and ligand binding sites in protein models by AlphaFold2
10.1021/acs.jcim.3c01761 · 2024 · External reference
ProstT5: bilingual language model for protein sequence and structure
2023 · External reference
10.1038/s41587-023-01773-0
10.1038/s41587-023-01773-0 · External reference
Bilingual language model for protein sequence and structure
10.1093/nargab/lqae150 · 2024 · External reference
Unresolved reference
External reference
SaProt: Protein Language MOdeling with strucgture-aware vocabulary
2023 · External reference
10.1093/bioinformatics/btaf582
10.1093/bioinformatics/btaf582 · External reference
Simulating 500 million years of evolution with a language model
2024 · External reference
10.1038/s41586-021-03819-2
10.1038/s41586-021-03819-2 · External reference
Highly accurate protein structure prediction for the human proteome
10.1038/s41586-021-03828-1 · 2021 · External reference
A point cloud graph neural network for protein–ligand binding site prediction
10.3390/ijms25179280 · 2024 · External reference
SiteRadar: utilizing graph machine learning for precise mapping of protein–ligand-binding sites
10.1021/acs.jcim.2c01413 · 2023 · External reference
10.1016/j.jmb.2023.168091
10.1016/j.jmb.2023.168091 · External reference
Structure-based prediction of nucleic acid binding residues by merging deep learning- and template-based approaches
10.1371/journal.pcbi.1011428 · 2023 · External reference
10.1038/s41592-022-01488-1
10.1038/s41592-022-01488-1 · External reference
10.1109/tpami.2021.3095381
10.1109/tpami.2021.3095381 · External reference
10.1101/2023.01.16.524265
10.1101/2023.01.16.524265 · External reference
10.1126/science.ade2574
10.1126/science.ade2574 · External reference
10.1038/s41598-024-71783-8
10.1038/s41598-024-71783-8 · External reference
Embeddings from deep learning transfer GO annotations beyond homology
10.1038/s41598-020-80786-0 · 2021 · External reference
10.1038/s41587-021-01156-3
10.1038/s41587-021-01156-3 · External reference
10.1038/s41467-024-51844-2
10.1038/s41467-024-51844-2 · External reference
Contrastive learning on protein embeddings enlightens midnight zone
10.1093/nargab/lqac043 · 2022 · External reference
10.1093/bioinformatics/btac474
10.1093/bioinformatics/btac474 · External reference
arXiv [q-bioBM
2022 · External reference
10.1002/bip.360221211
10.1002/bip.360221211 · External reference
10.1093/bioinformatics/btp163
10.1093/bioinformatics/btp163 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
GRaSP: a graph-based residue neighborhood strategy to predict binding sites
10.1093/bioinformatics/btaa805 · 2020 · External reference
10.1016/j.csbj.2021.03.022 · Admitted local publication
Risks and Benefits of Large Language Models for the Environment
10.1021/acs.est.3c01106 · 2023 · External reference
Reconciling the contrasting narratives on the environmental impact of large language models
10.1038/s41598-024-76682-6 · 2024 · External reference
10.1145/3442188.3445922
10.1145/3442188.3445922 · 2021 · External reference
Unresolved reference
External reference
10.1016/j.sbi.2023.102594
10.1016/j.sbi.2023.102594 · External reference
Community-wide evaluation of computational function prediction
10.1007/978-1-4939-3743-1_10 · 2017 · External reference
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins
10.1093/nar/gkad430 · 2023 · External reference
ProteinGym: large-scale benchmarks for protein design and fitness prediction
2023 · External reference
Refining embedding-based binding predictions by leveraging AlphaFold2 structures
2022 · External reference
