Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Research graph
References from From variability to stability: Sensitivity of network properties in IBD human gut microbiome studies. Local targets link to admitted publications; unresolved targets remain external evidence.
The Human Microbiome Project: a community resource for the healthy human microbiome
10.1371/journal.pbio.1001377 · 2012 · External reference
American Gut: an open platform for citizen science microbiome research. greene CS, editor
10.1128/msystems.00031-18 · 2018 · External reference
10.1186/s12915-014-0087-z
10.1186/s12915-014-0087-z · External reference
Metabolic and lifestyle factors accelerate disease onset and alter gut microbiome in inflammatory non-communicable diseases
10.1186/s12916-024-03709-0 · 2024 · External reference
10.1371/journal.pone.0090731
10.1371/journal.pone.0090731 · External reference
10.3390/nu13093208
10.3390/nu13093208 · External reference
10.1016/j.tim.2016.11.008
10.1016/j.tim.2016.11.008 · External reference
NetCoMi: network construction and comparison for microbiome data in R
10.1093/bib/bbaa290 · 2021 · External reference
Meta-analysis of microbiome association networks reveal patterns of dysbiosis in diseased microbiomes
10.1038/s41598-022-22541-1 · 2022 · External reference
Technical versus biological variability in a synthetic human gut community
10.1080/19490976.2022.2155019 · 2023 · External reference
Temporal variability in quantitative human gut microbiome profiles and implications for clinical research
10.1038/s41467-021-27098-7 · 2021 · External reference
Temporal and technical variability of human gut metagenomes
10.1186/s13059-015-0639-8 · 2015 · External reference
10.1371/journal.pone.0299255
10.1371/journal.pone.0299255 · External reference
10.1016/j.scitotenv.2020.143712
10.1016/j.scitotenv.2020.143712 · External reference
Network-based quantitative trait linkage analysis of microbiome composition in inflammatory bowel disease families
10.3389/fgene.2023.1048312 · 2023 · External reference
10.1038/s41564-018-0306-4
10.1038/s41564-018-0306-4 · External reference
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
10.3389/fmicb.2014.00219 · 2014 · External reference
A systematic survey of centrality measures for protein-protein interaction networks
10.1186/s12918-018-0598-2 · 2018 · External reference
Differential effect of genetic burden on disease phenotypes in Crohn’s disease and ulcerative colitis: analysis of a North American Cohort
10.1038/ajg.2013.464 · 2014 · External reference
Effects of rare microbiome taxa filtering on statistical analysis
10.3389/fmicb.2020.607325 · 2021 · External reference
10.1016/j.csbj.2023.10.001 · Admitted local publication
10.1371/journal.pcbi.1002687
10.1371/journal.pcbi.1002687 · External reference
MDiNE: a model to estimate differential co-occurrence networks in microbiome studies
10.1093/bioinformatics/btz824 · 2020 · External reference
10.1073/pnas.0400087101
10.1073/pnas.0400087101 · External reference
10.1103/physreve.70.066111
10.1103/physreve.70.066111 · External reference
10.3389/fmicb.2015.01200
10.3389/fmicb.2015.01200 · External reference
10.1017/cbo9780511815478
10.1017/cbo9780511815478 · 1994 · External reference
10.1088/0256-307x/27/7/078902
10.1088/0256-307x/27/7/078902 · External reference
10.1007/978-3-662-60709-1
10.1007/978-3-662-60709-1 · 2020 · External reference
Unresolved reference
2020 · External reference
10.2307/3033543
10.2307/3033543 · External reference
10.1016/0378-8733(78)90021-7
10.1016/0378-8733(78)90021-7 · External reference
The centrality index of a graph
10.1007/bf02289527 · 1966 · External reference
Unresolved reference
2017 · External reference
10.1155/2016/5828959
10.1155/2016/5828959 · External reference
Faecalibacterium: a bacterial genus with promising human health applications
10.1093/femsre/fuad039 · 2023 · External reference
Correlation between altered gut microbiota and elevated inflammation markers in patients with Crohn’s disease
10.3389/fimmu.2022.947313 · 2022 · External reference
An update on the role and potential molecules in relation to ruminococcus gnavus in inflammatory bowel disease, obesity and diabetes mellitus
10.2147/dmso.s456173 · 2024 · External reference
The Role of Faecalibacterium, Roseburia, and butyrate in inflammatory bowel disease
10.1159/000522247 · 2022 · External reference
10.1007/s00253-021-11453-1
10.1007/s00253-021-11453-1 · External reference
Bifidobacterium Longum: Protection against Inflammatory Bowel Disease
2021 · External reference
10.1016/j.micres.2022.127019
10.1016/j.micres.2022.127019 · External reference
The characterization of Enterococcus genus: resistance mechanisms and inflammatory bowel disease
10.1515/med-2020-0032 · 2020 · External reference
10.1017/s0007114519000680
10.1017/s0007114519000680 · External reference
Pro-Inflammatory diet is correlated with high veillonella rogosae, gut inflammation and clinical relapse of inflammatory bowel disease
10.3390/nu15194148 · 2023 · External reference
10.1053/j.gastro.2020.09.036
10.1053/j.gastro.2020.09.036 · External reference
10.3389/fimmu.2020.00906
10.3389/fimmu.2020.00906 · External reference
10.1371/journal.pcbi.1004226
10.1371/journal.pcbi.1004226 · External reference
Connect the dots: sketching out microbiome interactions through networking approaches
2023 · External reference
The Probabilistic Basis of Jaccard’s Index of Similarity
10.1093/sysbio/45.3.380 · 1996 · External reference
Unresolved reference
2014 · External reference
10.1371/journal.pbio.1002352
10.1371/journal.pbio.1002352 · External reference
Systematic review: the gut microbiome and its potential clinical application in inflammatory bowel disease
10.3390/microorganisms9050977 · 2021 · External reference
Humans as holobionts: implications for prevention and therapy
10.1186/s40168-018-0466-8 · 2018 · External reference
Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols
10.1038/s41598-024-57981-4 · 2024 · External reference
10.1002/9780470253489
10.1002/9780470253489 · 2008 · External reference
The stability of centrality measures when networks are sampled
10.1016/s0378-8733(03)00012-1 · 2003 · External reference
tmap: an integrative framework based on topological data analysis for population-scale microbiome stratification and association studies
10.1186/s13059-019-1871-4 · 2019 · External reference
Recent advances in targeted manipulation of the gut microbiome by prebiotics: from taxonomic composition to metabolic function
10.1016/j.cofs.2022.100959 · 2023 · External reference
10.1038/nature12331
10.1038/nature12331 · External reference
Rationally designed bacterial consortia to treat chronic immune-mediated colitis and restore intestinal homeostasis
10.1038/s41467-021-23460-x · 2021 · External reference
Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota
10.1038/s41598-021-82726-y · 2021 · External reference
10.1016/j.csbj.2021.05.001 · Admitted local publication
10.1126/science.aad3503
10.1126/science.aad3503 · External reference
10.1101/2024.09.16.613185
10.1101/2024.09.16.613185 · External reference