Research graph
References from Review of protein structure-based analyses that illuminate plant stress mechanisms. Local targets link to admitted publications; unresolved targets remain external evidence.
Abiotic stress effects on performance of horticultural crops
2019 · External reference
Biotic and abiotic stresses in plants
2019 · External reference
Protection of halophytes and their uses for cultivation of saline-alkali soil in China
10.3390/biology10050353 · 2021 · External reference
Unresolved reference
2020 · External reference
Endophytes and their potential in biotic stress management and crop production
10.3389/fmicb.2022.933017 · 2022 · External reference
High-resolution de novo structure prediction from primary sequence
2022 · External reference
Crop proteomics under abiotic stress: from data to insights
10.3390/plants11212877 · 2022 · External reference
Assessment of protein–protein interfaces in cryo-EM derived assemblies
10.1038/s41467-021-23692-x · 2021 · External reference
Protein structure determination by x-ray crystallography
2008 · External reference
RCSB Protein Data Bank (RCSB. org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning
10.1093/nar/gkac1077 · 2023 · External reference
10.1093/nar/gky1049
10.1093/nar/gky1049 · External reference
10.1038/s41586-021-03819-2
10.1038/s41586-021-03819-2 · External reference
Efficient and accurate prediction of protein structure using RoseTTAFold2
2023 · External reference
Language models of protein sequences at the scale of evolution enable accurate structure prediction
2022 · External reference
Accurate structure prediction of biomolecular interactions with AlphaFold 3
2024 · External reference
Insights into ligand binding to a glutathione S-transferase from mango: structure, thermodynamics and kinetics
10.1016/j.biochi.2017.01.005 · 2017 · External reference
Functional, structural and biochemical features of plant serinyl-glutathione transferases
10.3389/fpls.2019.00608 · 2019 · External reference
10.3390/molecules28031447
10.3390/molecules28031447 · External reference
Redox-regulated methionine oxidation of Arabidopsis thaliana glutathione transferase Phi9 induces H-site flexibility
10.1002/pro.3440 · 2019 · External reference
10.1002/jcc.20084
10.1002/jcc.20084 · External reference
Lectin domains at the frontiers of plant defense
10.3389/fpls.2014.00397 · 2014 · External reference
Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses
10.1093/glycob/cwq118 · 2010 · External reference
Unresolved reference
2011 · External reference
10.1016/j.fct.2019.110827
10.1016/j.fct.2019.110827 · External reference
10.1038/nsb0796-596
10.1038/nsb0796-596 · External reference
Biochemical and structural characterization of a mannose binding jacalin-related lectin with two-sugar binding sites from pineapple (Ananas comosus) stem
10.1038/s41598-018-29439-x · 2018 · External reference
10.1016/j.jmb.2004.03.040
10.1016/j.jmb.2004.03.040 · External reference
PDBsum: summaries and analyses of PDB structures
10.1093/nar/29.1.221 · 2001 · External reference
10.1007/s00251-021-01242-5
10.1007/s00251-021-01242-5 · External reference
10.1111/nph.19170
10.1111/nph.19170 · External reference
10.1126/science.aax1771
10.1126/science.aax1771 · External reference
10.1093/nar/gkac1014
10.1093/nar/gkac1014 · External reference
10.1042/bst20221087
10.1042/bst20221087 · External reference
Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana
2010 · External reference
10.1111/tpj.12056
10.1111/tpj.12056 · External reference
10.1126/science.289.5479.617
10.1126/science.289.5479.617 · External reference
10.1126/science.1243825
10.1126/science.1243825 · External reference
A comprehensive review on Cannabis sativa ethnobotany, phytochemistry, molecular docking and biological activities
10.3390/plants12061245 · 2023 · External reference
Assessing molecular docking tools to guide the design of polymeric materials formulations: a case study of canola and soybean protein
10.3390/polym14173690 · 2022 · External reference
Comprehensive in silico characterization of universal stress proteins in rice (Oryza sativa L.) with insight into their stress-specific transcriptional modulation
10.3389/fpls.2021.712607 · 2021 · External reference
Transcriptome-wide identification and computational insights into protein modeling and docking of CAMTA transcription factors in Eleusine coracana L (finger millet)
10.1016/j.ijbiomac.2022.03.073 · 2022 · External reference
10.1016/j.sbi.2023.102640
10.1016/j.sbi.2023.102640 · External reference
GWAS atlas: an updated knowledgebase integrating more curated associations in plants and animals
2023 · External reference
Genome wide study of cysteine rich receptor like proteins in Gossypium sp
10.1038/s41598-022-08943-1 · 2022 · External reference
Geneplot: a coordinate conversion approach for graphical representation of protein domain data on the exon-intron structure of a gene
2022 · External reference
Computational analysis on non-synonymous single nucleotide polymorphisms (nsSNPs) in L-type lectin receptor kinases (LECRK) protein in Arabidopsis thaliana
2025 · External reference
10.3390/ijms241914762
10.3390/ijms241914762 · External reference
In silico identification of SNP diversity in cultivated and wild tomato species: insight from molecular simulations
10.1038/srep38715 · 2016 · External reference
10.1021/acs.jafc.2c06846
10.1021/acs.jafc.2c06846 · External reference
Constraints on the expansion of paralogous protein families
10.1016/j.cub.2020.02.075 · 2020 · External reference
10.1016/j.hpj.2022.01.003
10.1016/j.hpj.2022.01.003 · External reference
10.1111/pce.13658
10.1111/pce.13658 · External reference
10.3390/ijms23084418
10.3390/ijms23084418 · External reference
10.1111/j.1747-0285.2007.00483.x
10.1111/j.1747-0285.2007.00483.x · External reference
The role of phytochromes in stress tolerance
10.1007/978-1-4614-6108-1_12 · 2013 · External reference
10.1038/s41477-023-01435-8
10.1038/s41477-023-01435-8 · External reference
10.1038/s41586-022-04529-z
10.1038/s41586-022-04529-z · External reference
10.1371/journal.pcbi.1008708
10.1371/journal.pcbi.1008708 · External reference
Intron retention is a major phenomenon in alternative splicing in Arabidopsis
10.1111/j.1365-313x.2004.02172.x · 2004 · External reference
Alternative splicing plays a vital role in regulating pollen allergen (Ole e 1) P19963 protein in Gossypium arboreum
10.1016/j.plgene.2022.100362 · 2022 · External reference
Evaluating the reliability of AlphaFold 2 for unknown complex structures with deep learning
2022 · External reference
Protein Data Bank (PDB): the single global macromolecular structure archive
10.1007/978-1-4939-7000-1_26 · 2017 · External reference
10.1038/s41594-021-00650-1
10.1038/s41594-021-00650-1 · External reference
Before and after AlphaFold2: an overview of protein structure prediction
10.3389/fbinf.2023.1120370 · 2023 · External reference
AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences
10.1093/nar/gkad1011 · 2024 · External reference
Comparative studies of AlphaFold, RoseTTAFold and Modeller: a case study involving the use of G-protein-coupled receptors
10.1093/bib/bbac308 · 2022 · External reference
Generalized biomolecular modeling and design with RoseTTAFold All-Atom
10.1126/science.adl2528 · 2024 · External reference
High-resolution de novo structure prediction from primary sequence
2022 · External reference
10.1093/bioinformatics/btm098
10.1093/bioinformatics/btm098 · External reference
MGnify: the microbiome sequence data analysis resource in 2023
10.1093/nar/gkac1080 · 2023 · External reference
Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data
2024 · External reference
AlphaFold 2
2020 · External reference
10.1038/s41596-021-00628-9
10.1038/s41596-021-00628-9 · External reference
10.1111/tra.12432
10.1111/tra.12432 · External reference
The HMMER web server for protein sequence similarity search
10.1002/cpbi.40 · 2017 · External reference
Protein structure prediction until CASP15
2022 · External reference
Protein complex prediction with AlphaFold-Multimer
2021 · External reference
10.1126/science.adg7492
10.1126/science.adg7492 · External reference
10.1016/j.molp.2024.07.008
10.1016/j.molp.2024.07.008 · External reference
Tsw–A case study on structure-function puzzles in plant NLRs with unusually large LRR domains
10.3389/fpls.2022.983693 · 2022 · External reference
Unresolved reference
2022 · External reference
Phylogenetic and AlphaFold predicted structure analyses provide insights for A1 aspartic protease family classification in Arabidopsis
10.3389/fpls.2023.1072168 · 2023 · External reference
ROS consumers or producers? Interpreting transcriptomic data by AlphaFold modeling provides insights into class III peroxidase functions in response to biotic and abiotic stresses
10.3390/ijms24098297 · 2023 · External reference
10.3390/plants12162925
10.3390/plants12162925 · External reference
Updated phylogeny and protein structure predictions revise the hypothesis on the origin of MADS-box transcription factors in land plants
10.1093/molbev/msad194 · 2023 · External reference
The pseudoenzyme β-amylase9 from Arabidopsis binds to and enhances the activity of α-amylase3: A possible mechanism to promote stress-induced starch degradation
2024 · External reference
10.1038/s41592-021-01365-3
10.1038/s41592-021-01365-3 · External reference
Unresolved reference
2024 · External reference
