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References from Smmit: A pipeline for integrating multiple single-cell multi-omics samples. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/nmeth.4380
10.1038/nmeth.4380 · External reference
10.1016/j.cell.2020.09.056
10.1016/j.cell.2020.09.056 · External reference
10.1038/s41587-019-0290-0
10.1038/s41587-019-0290-0 · External reference
10.1038/s41586-021-03933-1
10.1038/s41586-021-03933-1 · External reference
Enhancer hijacking drives oncogenic bcl11b expression in lineage-ambiguous stem cell leukemiabcl11b hijacking in lineage-ambiguous leukemia
10.1158/2159-8290.cd-21-0145 · 2021 · External reference
10.1016/j.cell.2022.03.011
10.1016/j.cell.2022.03.011 · External reference
Comparative analysis of gene regulation in single cells using compass
2025 · External reference
Multigrate: single-cell multi-omic data integration
2022 · External reference
Robust probabilistic modeling for single-cell multimodal mosaic integration and imputation via scvaeit
10.1073/pnas.2214414119 · 2022 · External reference
scmomat jointly performs single cell mosaic integration and multi-modal bio-marker detection
10.1038/s41467-023-36066-2 · 2023 · External reference
10.1038/s41592-023-01909-9
10.1038/s41592-023-01909-9 · External reference
Mofa+: a statistical framework for comprehensive integration of multi-modal single-cell data
10.1186/s13059-020-02015-1 · 2020 · External reference
10.1038/s41592-020-01050-x
10.1038/s41592-020-01050-x · External reference
10.1038/s41592-019-0619-0
10.1038/s41592-019-0619-0 · External reference
10.1016/j.cell.2021.04.048
10.1016/j.cell.2021.04.048 · External reference
10.1038/s41586-021-04345-x
10.1038/s41586-021-04345-x · External reference
A benchmark of batch-effect correction methods for single-cell rna sequencing data
2020 · External reference
10.1038/s41592-021-01336-8
10.1038/s41592-021-01336-8 · External reference
Assessing gpt-4 for cell type annotation in single-cell rna-seq analysis
2024 · External reference
10.1038/nbt.4096
10.1038/nbt.4096 · External reference
10.1371/journal.pcbi.1011288
10.1371/journal.pcbi.1011288 · External reference
A novel metric reveals previously unrecognized distortion in dimensionality reduction of scrna-seq data
2019 · External reference
10.1038/s41467-025-59997-4
10.1038/s41467-025-59997-4 · External reference
10.1038/s41586-019-0969-x
10.1038/s41586-019-0969-x · External reference
10.1093/nar/gkw430
10.1093/nar/gkw430 · External reference
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
10.1186/s12864-018-4772-0 · 2018 · External reference
10.1038/s41592-021-01282-5
10.1038/s41592-021-01282-5 · External reference
Unresolved reference
2021 · External reference
10.1038/s41592-024-02429-w
10.1038/s41592-024-02429-w · External reference
