Research graph
References from STAG-LLM: Predicting TCR-pHLA binding with protein language models and computationally generated 3D structures. Local targets link to admitted publications; unresolved targets remain external evidence.
10.3390/vaccines11040835
10.3390/vaccines11040835 · External reference
10.1038/nrc2355
10.1038/nrc2355 · External reference
10.1038/s41577-023-00835-3
10.1038/s41577-023-00835-3 · External reference
10.3389/fimmu.2022.1014256
10.3389/fimmu.2022.1014256 · External reference
10.1016/j.immuno.2024.100045
10.1016/j.immuno.2024.100045 · External reference
High frequency of shared clonotypes in human T cell receptor repertoires
10.1016/j.celrep.2020.107882 · 2020 · External reference
10.1111/tan.15549
10.1111/tan.15549 · External reference
10.1093/bioinformatics/btx286
10.1093/bioinformatics/btx286 · External reference
10.1093/nar/gkx760
10.1093/nar/gkx760 · External reference
Cross-reactivity of T cells and its role in the immune system
10.1615/critrevimmunol.v32.i4.50 · 2012 · External reference
10.1016/j.immuni.2021.02.014
10.1016/j.immuni.2021.02.014 · External reference
10.1016/j.csbj.2023.11.037
10.1016/j.csbj.2023.11.037 · External reference
10.3389/fimmu.2021.664514
10.3389/fimmu.2021.664514 · External reference
10.1101/2023.10.12.562001
10.1101/2023.10.12.562001 · External reference
10.1093/bib/bbae420
10.1093/bib/bbae420 · External reference
Heterotcr: a heterogeneous graph neural network-based method for predicting peptide-tcr interaction
10.1038/s42003-024-06380-6 · 2024 · External reference
10.1038/s41423-019-0273-6
10.1038/s41423-019-0273-6 · External reference
10.1038/s41467-023-37532-7
10.1038/s41467-023-37532-7 · External reference
10.1093/nar/gkx971
10.1093/nar/gkx971 · External reference
10.1093/nar/gkad356
10.1093/nar/gkad356 · External reference
10.1038/s43588-021-00076-1
10.1038/s43588-021-00076-1 · External reference
10.1126/sciadv.adl0161
10.1126/sciadv.adl0161 · External reference
Structure-directed pan-specific t-cell receptor–peptide-major histocompatibility complex interaction prediction
2025 · External reference
Structure-based prediction of t cell receptor recognition of unseen epitopes using tcren
10.1038/s43588-024-00653-0 · 2024 · External reference
10.1039/d4sc08141b
10.1039/d4sc08141b · External reference
Predicting tcr sequences for unseen antigen epitopes using structural and sequence features
2024 · External reference
10.1038/s42003-021-02610-3
10.1038/s42003-021-02610-3 · External reference
10.1101/2023.12.01.569599
10.1101/2023.12.01.569599 · External reference
10.1109/tcbbio.2024.3504235
10.1109/tcbbio.2024.3504235 · External reference
10.1016/j.csbj.2024.06.028
10.1016/j.csbj.2024.06.028 · External reference
Unresolved reference
2022 · External reference
10.1021/acs.jcim.8b00905
10.1021/acs.jcim.8b00905 · External reference
10.1109/tkde.2023.3314502
10.1109/tkde.2023.3314502 · External reference
10.1038/s41467-021-23303-9
10.1038/s41467-021-23303-9 · External reference
10.1038/s41598-022-10775-y
10.1038/s41598-022-10775-y · External reference
Graph representation learning for structural proteomics
10.1042/etls20210225 · 2021 · External reference
10.1101/622803
10.1101/622803 · External reference
Unresolved reference
External reference
10.1093/bib/bbae480
10.1093/bib/bbae480 · External reference
Integration of pre-trained protein language models into geometric deep learning networks
10.1038/s42003-023-05133-1 · 2023 · External reference
Ssemb: a joint embedding of protein sequence and structure enables robust variant effect predictions
10.1038/s41467-024-53982-z · 2024 · External reference
Sesnet: sequence-structure feature-integrated deep learning method for data-efficient protein engineering
10.1186/s13321-023-00688-x · 2023 · External reference
Unresolved reference
2019 · External reference
Unresolved reference
2020 · External reference
10.1093/nar/gku938
10.1093/nar/gku938 · External reference
Unresolved reference
2019 · External reference
10.3389/fimmu.2022.1055151
10.3389/fimmu.2022.1055151 · External reference
Stitchr: stitching coding TCR nucleotide sequences from V/J/CDR3 information
10.1093/nar/gkac190 · 2022 · External reference
10.1002/pro.2181
10.1002/pro.2181 · External reference
10.1038/s41586-021-03819-2
10.1038/s41586-021-03819-2 · External reference
10.1038/s42256-023-00619-3
10.1038/s42256-023-00619-3 · External reference
10.3389/fimmu.2022.893247
10.3389/fimmu.2022.893247 · External reference
10.1038/s41467-018-06405-9
10.1038/s41467-018-06405-9 · External reference
10.1093/biomet/29.3-4.350
10.1093/biomet/29.3-4.350 · External reference
Unresolved reference
2024 · External reference
Unresolved reference
External reference
10.1038/ni1175
10.1038/ni1175 · External reference
Discovering latent node information by graph attention network
10.1038/s41598-021-85826-x · 2021 · External reference
10.3389/fimmu.2017.01210
10.3389/fimmu.2017.01210 · External reference
10.1038/s42256-024-00913-8
10.1038/s42256-024-00913-8 · External reference
10.1038/s41587-020-0505-4
10.1038/s41587-020-0505-4 · External reference
10.7554/elife.82813
10.7554/elife.82813 · External reference
10.1101/2025.03.22.644721
10.1101/2025.03.22.644721 · External reference
Unresolved reference
External reference
Quantitative approaches for decoding the specificity of the human t cell repertoire
10.3389/fimmu.2023.1228873 · 2023 · External reference
10.1002/prot.22934
10.1002/prot.22934 · External reference
Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich era
10.1073/pnas.1314045110 · 2013 · External reference
Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models
10.1103/physreve.87.012707 · 2013 · External reference
10.1002/pro.4792
10.1002/pro.4792 · External reference
