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References from Cyanobacteriochrome-like GAF folds in phages revealed via AlphaFold proteomic modelling. Local targets link to admitted publications; unresolved targets remain external evidence.
Are there 1031 virus particles on earth, or more, or fewer?
10.1128/jb.00052-20 · 2020 · External reference
10.1139/gen-2013-0152
10.1139/gen-2013-0152 · External reference
10.1038/nrmicro1750
10.1038/nrmicro1750 · External reference
10.1016/j.virusres.2017.02.002
10.1016/j.virusres.2017.02.002 · External reference
10.1016/j.virusres.2017.11.025
10.1016/j.virusres.2017.11.025 · External reference
10.1038/s41586-021-04332-2
10.1038/s41586-021-04332-2 · External reference
10.1038/s41586-024-07487-w
10.1038/s41586-024-07487-w · External reference
10.1093/nar/gkae1119
10.1093/nar/gkae1119 · External reference
10.3390/v15051116
10.3390/v15051116 · External reference
10.1016/b978-012088426-1/50007-x
10.1016/b978-012088426-1/50007-x · External reference
10.1007/978-3-319-24945-2
10.1007/978-3-319-24945-2 · 2016 · External reference
10.1016/j.cub.2023.09.040
10.1016/j.cub.2023.09.040 · External reference
Bacterial photosynthesis genes in a virus
10.1038/424741a · 2003 · External reference
10.1128/jb.01534-07
10.1128/jb.01534-07 · External reference
10.1111/j.1462-2920.2011.02502.x
10.1111/j.1462-2920.2011.02502.x · External reference
An uncultured marine cyanophage encodes an active phycobilisome proteolysis adaptor protein NblA
2019 · External reference
10.1038/s41564-017-0002-9
10.1038/s41564-017-0002-9 · External reference
Structural models predict a significantly higher binding affinity between the NblA protein of cyanophage Ma-LMM01 and the phycocyanin of microcystis aeruginosa NIES-298 compared to the host homolog
10.1093/ve/veae082 · 2024 · External reference
10.1007/s43630-023-00387-4
10.1007/s43630-023-00387-4 · External reference
10.1016/j.jmb.2023.168313
10.1016/j.jmb.2023.168313 · External reference
10.1146/annurev-micro-041522-094613
10.1146/annurev-micro-041522-094613 · External reference
10.1111/1462-2920.14425
10.1111/1462-2920.14425 · External reference
10.1038/s41587-023-01773-0
10.1038/s41587-023-01773-0 · External reference
DALI shines a light on remote homologs: one hundred discoveries
10.1002/pro.4519 · 2023 · External reference
Database resources of The National center for biotechnology information in 2025
10.1093/nar/gkae979 · 2025 · External reference
10.6019/tol.alphafold-w.2024.00001.1
10.6019/tol.alphafold-w.2024.00001.1 · External reference
Unresolved reference
External reference
10.1002/pro.4792
10.1002/pro.4792 · External reference
10.1093/nar/gkae1091
10.1093/nar/gkae1091 · External reference
10.1016/s0968-0004(00)89105-7
10.1016/s0968-0004(00)89105-7 · External reference
Cellular homologs of the double jelly-roll major capsid proteins clarify the origins of an ancient virus kingdom
10.1073/pnas.2120620119 · 2022 · External reference
DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks
2022 · External reference
10.1016/s0022-2836(05)80360-2
10.1016/s0022-2836(05)80360-2 · External reference
10.1093/nar/gkh340
10.1093/nar/gkh340 · External reference
10.1093/molbev/msp259
10.1093/molbev/msp259 · External reference
10.1093/oxfordjournals.molbev.a026334
10.1093/oxfordjournals.molbev.a026334 · External reference
10.1093/sysbio/syq010
10.1093/sysbio/syq010 · External reference
10.1093/molbev/msn067
10.1093/molbev/msn067 · External reference
10.1016/j.molcel.2023.05.036
10.1016/j.molcel.2023.05.036 · External reference
10.1093/hesc/9780198794141.001.0001
10.1093/hesc/9780198794141.001.0001 · 2019 · External reference
10.1007/978-1-0716-0270-6_3
10.1007/978-1-0716-0270-6_3 · 2020 · External reference
10.1038/s41586-023-06583-7
10.1038/s41586-023-06583-7 · External reference
10.1038/s41586-023-06622-3
10.1038/s41586-023-06622-3 · External reference
10.1002/9781119678304.ch2
10.1002/9781119678304.ch2 · 2022 · External reference
10.3390/toxins14060385
10.3390/toxins14060385 · External reference
Tradeoffs between phage resistance and nitrogen fixation drive the evolution of genes essential for cyanobacterial heterocyst functionality
10.1093/ismejo/wrad008 · 2024 · External reference
10.1006/jmbi.1993.1489
10.1006/jmbi.1993.1489 · External reference
10.1016/j.sbi.2019.02.005
10.1016/j.sbi.2019.02.005 · External reference
A heme-based redox sensor in the methanogenic archaeon methanosarcina acetivorans
10.1074/jbc.m113.476267 · 2013 · External reference
10.1016/s0955-0674(99)00073-3
10.1016/s0955-0674(99)00073-3 · External reference
A GAF-domain-regulated adenylyl cyclase from anabaena is a self-activating cAMP switch
10.1093/emboj/cdf375 · 2002 · External reference
Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor
10.1093/emboj/19.20.5288 · 2000 · External reference
10.1021/bi3013565
10.1021/bi3013565 · External reference
Isolation of cyanophage CrV infecting cylindrospermopsis raciborskii and the influence of temperature and irradiance on CrV proliferation
10.3354/ame01800 · 2016 · External reference
10.1111/j.1462-2920.2009.02081.x
10.1111/j.1462-2920.2009.02081.x · External reference
10.1093/nar/gkae1010
10.1093/nar/gkae1010 · External reference
Unresolved reference
External reference
10.1101/2024.12.13.628456
10.1101/2024.12.13.628456 · External reference
