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References from Optimization of regulatory DNA with active learning. Local targets link to admitted publications; unresolved targets remain external evidence.
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Deep learning for optimization of protein expression
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Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping
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Accuracy and data efficiency in deep learning models of protein expression
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External reference
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Unresolved reference
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Unresolved reference
External reference
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2009 · External reference
Cell-free protein synthesis as a method to rapidly screen machine learning-generated protease variants
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Active learning-assisted directed evolution
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Assessing the information content of structural and protein–ligand interaction representations for the classification of kinase inhibitor binding modes via machine learning and active learning
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Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
2025 · External reference
Towards a fully automated algorithm driven platform for biosystems design
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Active learning of enhancers and silencers in the developing neural retina
2025 · External reference
Iterative deep learning design of human enhancers exploits condensed sequence grammar to achieve cell-type specificity
2025 · External reference
10.1016/s0022-5193(89)80019-0
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10.1038/s41587-019-0315-8
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Improving the generalization of protein expression models with mechanistic sequence information
10.1093/nar/gkaf020 · 2025 · External reference
10.1101/gad.351800.124
10.1101/gad.351800.124 · External reference
A massively parallel reporter assay library to screen short synthetic promoters in mammalian cells
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10.1038/s41587-019-0315-8 · External reference
Transfer learning for cross-context prediction of protein expression from 5’UTR sequence
2024 · External reference
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10.1021/acssynbio.3c00120 · 2023 · External reference
10.1101/2023.01.30.526198
10.1101/2023.01.30.526198 · External reference
A community effort to optimize sequence-based deep learning models of gene regulation
2024 · External reference
Investigating the determinants of performance in machine learning for protein fitness prediction
10.1002/pro.70235 · 2025 · External reference
Code and data for “Optimization of regulatory DNA with active learning”
2025 · External reference