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References from Comparative genomic analysis of the Pediococcus genus reveals functional diversity for fermentation and probiotic applications. Local targets link to admitted publications; unresolved targets remain external evidence.
Lactic acid bacteria: nature, characterization, mode of action, products and applications
10.1016/j.procbio.2025.02.010 · 2025 · External reference
CARD 2023: Expanded curation, support for machine learning, and resistome prediction at the comprehensive antibiotic resistance database
10.1093/nar/gkac920 · 2023 · External reference
Metabolic analysis of the CAZy class glycosyltransferases in rhizospheric soil fungiome of the plant species Moringa oleifera
10.1016/j.sjbs.2024.103956 · 2024 · External reference
Preservative effectiveness of lactic acid bacteria on fruits and vegetables
10.1155/ijcb/5833236 · 2025 · External reference
Impact of probiotics, prebiotics, and synbiotics on digestive enzymes, oxidative stress, and antioxidant defense in fish farming: current insights and future perspectives
2024 · External reference
Genome sequence and transcriptome analysis of meat-spoilage-associated lactic acid bacterium Lactococcus piscium MKFS47
10.1128/aem.00320-15 · 2015 · External reference
Multifunctional applications of lactic acid bacteria: enhancing safety, quality, and nutritional value in foods and fermented beverages
10.3390/foods13233714 · 2024 · External reference
Probiogenomics of Leuconostoc mesenteroides Strains F-21 and F-22 Isolated from Human Breast Milk Reveal Beneficial Properties
10.1007/s12602-023-10170-7 · 2025 · External reference
Genomic and Phenotypic Insight into the Probiotic Potential of Lactic Acid Bacterial spp. Associated with the Human Gut Mucosa
10.1007/s12602-023-10193-0 · 2025 · External reference
10.1007/s00425-012-1803-y
10.1007/s00425-012-1803-y · External reference
Transcriptomics reveal different metabolic strategies for acid resistance and gamma-aminobutyric acid (GABA) production in select Levilactobacillus brevis strains
10.1186/s12934-021-01658-4 · 2021 · External reference
Microbial contribution to Wine Aroma and its intended use for wine quality improvement
10.3390/molecules22020189 · 2017 · External reference
Probiotic properties of a phytase producing Pediococcus acidilactici strain SMVDUDB2 isolated from traditional fermented cheese product, Kalarei
10.1038/s41598-020-58676-2 · 2020 · External reference
Characterization of a stress tolerance-defective mutant of Lactobacillus rhamnosus LRB
10.1111/omi.12262 · 2019 · External reference
antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation
10.1093/nar/gkaf334 · 2025 · External reference
10.1089/ars.2020.8039
10.1089/ars.2020.8039 · External reference
Comparative genomic analysis of selected lactic acid bacteria and phenotypic association of the key genes involved in fructan and ribose utilisation
10.1007/s44351-025-00016-8 · 2025 · External reference
10.1016/j.cub.2019.08.012
10.1016/j.cub.2019.08.012 · External reference
Antioxidant properties of lactic acid bacteria
10.1134/s0026261722601439 · 2022 · External reference
Effect of high hydrostatic pressure on stress-related dnaK, hrcA, and ctsR expression patterns in selected Lactobacilli Strains
10.3390/genes12111720 · 2021 · External reference
Effects of heat, cold, acid and bile salt adaptations on the stress tolerance and protein expression of kefir-isolated probiotic Lactobacillus kefiranofaciens M1
10.1016/j.fm.2017.03.020 · 2017 · External reference
10.1128/mmbr.67.3.429-453.2003
10.1128/mmbr.67.3.429-453.2003 · External reference
Production of gamma-aminobutyric acid from lactic acid bacteria: a systematic review
2020 · External reference
Pediococcus argentinicus sp. nov. from Argentinean fermented wheat flour and identification of Pediococcus species by pheS, rpoA and atpA sequence analysis
10.1099/ijs.0.65833-0 · 2008 · External reference
Gamma-aminobutyric acid (GABA) production by potential probiotic strains of indigenous fermented foods origin and RSM based production optimization
10.1016/j.lwt.2023.114511 · 2023 · External reference
The biotechnological potential of Pediococcus spp. isolated from Kombucha Microbial Consortium
10.3390/foods9121780 · 2020 · External reference
Exopolysaccharides producing lactic acid bacteria in wine and other fermented beverages: for better or for worse?
10.3390/foods10092204 · 2021 · External reference
Pediococcus pentosaceus CECT 8330 protects DSS-induced colitis and regulates the intestinal microbiota and immune responses in mice
10.1186/s12967-022-03235-8 · 2022 · External reference
Cell surface-associated protein elongation factor Tu interacts with fibronectin mediating the adhesion of Lactobacillus plantarum HC-2 to Penaeus vannamei intestinal epithelium and inhibiting the apoptosis induced by LPS and pathogen in Caco-2 cells
10.1016/j.ijbiomac.2022.11.252 · 2023 · External reference
Expression of the atpD gene in probiotic Lactobacillus plantarum strains under in vitro acidic conditions using RT-qPCR
10.1016/j.resmic.2010.03.012 · 2010 · External reference
Probiotic Properties and Proteomic Analysis of Pediococcus pentosaceus 1101
10.3390/foods12010046 · 2023 · External reference
Pediococcus stilesii sp. nov., isolated from maize grains
10.1099/ijs.0.63944-0 · 2006 · External reference
Bacteriocin CM175, a new high molecular weight and phage associated protein produced by Pediococcus pentosaceus CM175
10.1016/j.ijbiomac.2024.137584 · 2024 · External reference
Short-chain fatty acid and vitamin production potentials of Lactobacillus isolated from fermented foods of Khasi Tribes, Meghalaya, India
10.1007/s13213-019-01500-8 · 2019 · External reference
Statement on how to interpret the QPS qualification on ‘acquired antimicrobial resistance genes
2023 · External reference
Transcriptomic analysis of Staphylococcus equorum KM1031 from the high-salt fermented seafood jeotgal under chloramphenicol, erythromycin and lincomycin stresses
10.1038/s41598-022-19897-9 · 2022 · External reference
10.1021/acs.jafc.5c03465
10.1021/acs.jafc.5c03465 · External reference
Lactobacillus gasseri: Screening, Functional Properties, and Current Applications in the Food Industry
10.1080/87559129.2024.2424956 · 2025 · External reference
Revealing the response mechanism of Pediococcus pentosaceus under acid and alcohol stresses via a combined transcriptomic and metabolomic analysis
2025 · External reference
Microbial glycoside hydrolases in the first year of life: an analysis review on their presence and importance in infant gut
10.3389/fmicb.2021.631282 · 2021 · External reference
10.3390/cimb46010015
10.3390/cimb46010015 · External reference
10.1038/s41467-018-07641-9
10.1038/s41467-018-07641-9 · External reference
Screening of GABA-producing lactic acid bacteria from thai fermented foods and probiotic potential of Levilactobacillus brevis F064A for GABA-fermented mulberry juice production
10.3390/microorganisms9010033 · 2021 · External reference
Antibacterial activity of pediocin and pediocin-producing bacteria against Listeria monocytogenes in meat products
10.3389/fmicb.2021.709959 · 2021 · External reference
10.1016/j.celrep.2022.111735
10.1016/j.celrep.2022.111735 · External reference
Identification of carbohydrate gene clusters obtained from in vitro fermentations as predictive biomarkers of prebiotic responses
10.1186/s12866-024-03344-y · 2024 · External reference
Genomic Insights into Pediococcus pentosaceus ENM104: A Probiotic with Potential Antimicrobial and Cholesterol-Reducing Properties
10.3390/antibiotics13090813 · 2024 · External reference
Gamma-glutamyl-gamma-aminobutyrate hydrolase in the putrescine utilization pathway of Escherichia coli K-12
10.1111/j.1574-6968.2006.00137.x · 2006 · External reference
Acid tolerance responses and their mechanisms in Lactiplantibacillus plantarum LM1001
10.1007/s10068-024-01582-4 · 2024 · External reference
Screening and characterization of Pediococcus acidilactici LC-9-1 toward selection as a potential probiotic for poultry with antibacterial and antioxidative properties
10.3390/antiox12020215 · 2023 · External reference
Thermo-adaptive evolution of Corynebacterium glutamicum reveals the regulatory functions of fasR and hrcA in heat tolerance
10.1186/s12934-024-02568-x · 2024 · External reference
Exploring CAZymes Differences in Pediococcus acidilactici Strain OM681363 and Lacticaseibacillus paracasei Strain ON606241 based on whole-genome sequencing
10.3390/fermentation11020064 · 2025 · External reference
VFDB 2022: A general classification scheme for bacterial virulence factors
10.1093/nar/gkab1107 · 2021 · External reference
Sequence-based screening and characterization of cytosolic mandelate oxidase using oxygen as electron acceptor
10.1016/j.enzmictec.2014.11.001 · 2015 · External reference
10.1007/s00726-023-03311-3
10.1007/s00726-023-03311-3 · External reference
Molecular Responses of Lactobacilli to Plant Phenolic Compounds: A Comparative Review of the Mechanisms Involved
10.3390/antiox11010018 · 2022 · External reference
The oxidized protein repair enzymes methionine sulfoxide reductases and their roles in protecting against oxidative stress, in ageing and in regulating protein function
10.3390/antiox7120191 · 2018 · External reference
A comparative study on the genomic and functional diversity of 187 strains of Lactobacillus helveticus
10.1016/j.fbio.2024.105268 · 2024 · External reference
Exploring the contributions of two glutamate decarboxylase isozymes in Lactobacillus brevis to acid resistance and γ-aminobutyric acid production
10.1186/s12934-018-1029-1 · 2018 · External reference
10.3390/microorganisms9102128
10.3390/microorganisms9102128 · External reference
Molecular mechanics of Staphylococcus aureus adhesin, CNA, and the inhibition of bacterial adhesion by stretching collagen
10.1371/journal.pone.0179601 · 2017 · External reference
The occurrence of folate biosynthesis genes in lactic acid bacteria from different sources
10.17113/ftb.61.02.23.7929 · 2023 · External reference
Whole-genome sequencing and in vitro probiotic characterization of Pediococcus pentosaceus ELAB 60WB isolated from fermented cherry tomatoes
10.1016/j.lwt.2025.117547 · 2025 · External reference
Unlocking flavor potential using microbial β-Glucosidases in food processing
10.3390/foods12244484 · 2023 · External reference
NADH peroxidase plays a crucial role in consuming H2O2 in Lactobacillus casei IGM394
10.12938/bmfh.19-027 · 2020 · External reference
Unresolved reference
2022 · External reference
DltC acts as an interaction hub for AcpS, DltA and DltB in the teichoic acid d-alanylation pathway of Lactiplantibacillus plantarum
10.1038/s41598-022-17434-2 · 2022 · External reference
Evaluation of an O2-Substituted (1–3)-β-D-Glucan, Produced by Pediococcus parvulus 2.6, in ex vivo Models of Crohn’s Disease
2021 · External reference
10.1371/journal.pone.0050989
10.1371/journal.pone.0050989 · External reference
10.1093/bioinformatics/btv421
10.1093/bioinformatics/btv421 · External reference
Editorial: Omics and Systems Approaches to Study the Biology and Applications of Lactic Acid Bacteria
10.3389/fmicb.2020.01786 · 2020 · External reference
Research of multicopper oxidase and its degradation of histamine in Lactiplantibacillus plantarum LPZN19
10.3390/microorganisms11112724 · 2023 · External reference
Biotechnological Innovations and Therapeutic application of Pediococcus and lactic acid bacteria: the next-generation microorganism
10.3389/fbioe.2021.802031 · 2022 · External reference
Analysis of phylogenetic markers for classification of a hydrogen peroxide producing Streptococcus oralis isolated from saliva by a newly devised differential medium
10.1007/s12275-022-2261-2 · 2022 · External reference
Quorum-sensing agr system of Staphylococcus aureus primes gene expression for protection from lethal oxidative stress
10.7554/elife.89098 · 2024 · External reference
Pediococcus spp.: An important genus of lactic acid bacteria and pediocin producers
10.1016/j.biotechadv.2017.03.004 · 2017 · External reference
10.1371/journal.pone.0009490
10.1371/journal.pone.0009490 · External reference
Functional Profiling of Enterococcus and Pediococcus Strains: an in vitro study on probiotic and postbiotic properties
10.3390/microorganisms13061348 · 2025 · External reference
Biopreservation of Food Using Bacteriocins From Lactic Acid Bacteria: Classification, Mechanisms, and Commercial Applications
2024 · External reference
10.3390/bacteria2010002
10.3390/bacteria2010002 · External reference
10.1371/journal.pone.0316270
10.1371/journal.pone.0316270 · External reference
10.3390/antibiotics13121197
10.3390/antibiotics13121197 · External reference
Development of a workflow for the selection, identification and optimization of lactic acid bacteria with high γ-aminobutyric acid production
10.1038/s41598-023-40808-z · 2023 · External reference
Exploring the potential of lactic acid bacteria to produce postbiotics with antimicrobial and antioxidant properties: focus on the probiotic strain Pediococcus pentosaceus RC007 for industrial-scale production
10.1093/ijfood/vvae003 · 2025 · External reference
Genomic insights into novel extremotolerant bacteria isolated from the NASA Phoenix mission spacecraft assembly cleanrooms
10.1186/s40168-025-02082-1 · 2025 · External reference
10.1093/bioinformatics/btu153
10.1093/bioinformatics/btu153 · External reference
Effect of Different Pediococcus pentosaceus and Lactobacillus plantarum Strains on Quality Characteristics of Dry Fermented Sausage after Completion of Ripening Period
10.5851/kosfa.2021.e21 · 2021 · External reference
10.1016/b978-0-323-91805-3.00004-6
10.1016/b978-0-323-91805-3.00004-6 · External reference
Systematic review of publicly available non-Dikarya fungal proteomes for understanding their plant biomass-degrading and bioremediation potentials
10.1186/s40643-019-0264-6 · 2019 · External reference
Evaluation of probiotic properties of Pediococcus acidilactici M76 producing functional exopolysaccharides and its lactic acid fermentation of Black Raspberry extract
10.3390/microorganisms9071364 · 2021 · External reference
The Microbial Diversity of Traditional Spontaneously Fermented Lambic Beer
10.1371/journal.pone.0095384 · 2014 · External reference
Antimicrobial susceptibility of lactic acid bacteria strains of potential use as feed additives - the basic safety and usefulness criterion
10.3389/fvets.2021.687071 · 2021 · External reference
The transcriptional response of Lactobacillus sanfranciscensis DSM 20451T and its tcyB mutant lacking a functional cystine transporter to diamide stress
10.1128/aem.00367-14 · 2014 · External reference
ClpP protease modulates bacterial growth, stress response, and bacterial virulence in Brucella abortus
10.1186/s13567-023-01200-x · 2023 · External reference
Genomic insight into Pediococcus acidilactici HN9, a potential probiotic strain isolated from the traditional thai-style fermented Beef Nhang
10.3390/microorganisms9010050 · 2021 · External reference
Comprehensive in vitro and whole-genome characterization of probiotic properties in Pediococcus acidilactici P10 isolated from Iranian broiler chicken
10.1038/s41598-025-13470-w · 2025 · External reference
Identification of lactic acid bacteria from fermented tea leaves (miang) in Thailand and proposals of Lactobacillus thailandensis sp. nov., Lactobacillus camelliae sp. nov., and Pediococcus siamensis sp. nov
10.2323/jgam.53.7 · 2007 · External reference
The metabolites of lactic acid bacteria: classification, biosynthesis and modulation of gut microbiota
10.15698/mic2023.03.792 · 2023 · External reference
Comprehensive phenotypic characterization and genomic analysis unveil the probiotic potential of Bacillus velezensis K12
10.3390/ani15060798 · 2025 · External reference
The protein regulator ArgR and the sRNA derived from the 3’-UTR region of its gene, ArgX, both regulate the arginine deiminase pathway in Lactococcus lactis
10.1371/journal.pone.0218508 · 2019 · External reference
BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins
10.1093/nar/gky383 · 2018 · External reference
10.3390/ijms18071551
10.3390/ijms18071551 · External reference
Translational attenuation mechanism of ErmB Induction by erythromycin is dependent on two leader peptides
2021 · External reference
Metabolism Characteristics of Lactic Acid Bacteria and the Expanding Applications in Food Industry
10.3389/fbioe.2021.612285 · 2021 · External reference
Assessment of beneficial effects and identification of host adaptation-associated genes of Ligilactobacillus salivarius isolated from badgers
10.1186/s12864-023-09623-8 · 2023 · External reference
A combined physiological and proteomic approach to reveal lactic-acid-induced alterations in Lactobacillus casei Zhang and its mutant with enhanced lactic acid tolerance
10.1007/s00253-011-3757-6 · 2012 · External reference
10.1007/978-981-13-7283-4_3
10.1007/978-981-13-7283-4_3 · 2019 · External reference
Characterization of Sortase A in Lactobacillus acidophilus ATCC 4356 INvolved in Adherence to Intestinal Cells
10.2217/fmb-2019-0219 · 2020 · External reference
Multi-omics analyses reveal altered gut microbial thiamine production in obesity
2025 · External reference
Arginine deiminase pathway of Tetragenococcus halophilus contributes to improve the acid tolerance of lactic acid bacteria
10.1016/j.fm.2023.104281 · 2023 · External reference
Identification of ClpB, a molecular chaperone involved in the stress tolerance and virulence of Streptococcus agalactiae
10.1186/s13567-024-01318-6 · 2024 · External reference
Insights into regulating mechanism of mutagenesis strains of Elizabethkingia meningoseptica sp. F2 by omics analysis
10.1007/s00284-023-03270-8 · 2023 · External reference
Transcriptional profiling analysis of Bacillus subtilis in response to high levels of Fe3+
10.1007/s00284-016-0998-8 · 2016 · External reference
Marine Pediococcus pentosaceus E3 probiotic properties, whole-genome sequence analysis, and safety assessment
10.1007/s12602-024-10283-7 · 2024 · External reference
10.3390/genes16010050
10.3390/genes16010050 · External reference
Enhancing menaquinone-7 biosynthesis by adaptive evolution of Bacillus natto through chemical modulator
10.1186/s40643-022-00609-0 · 2022 · External reference
Pediococcus cellicola sp. nov., a novel lactic acid coccus isolated from a distilled-spirit-fermenting cellar
10.1099/ijs.0.63778-0 · 2005 · External reference
Whole-genome analysis and probiotic assessment of Pediococcus acidilactici PA_ZFRA1 isolated from Bovine Rumen
2025 · External reference
Pan-genome analysis links the hereditary variation of Leptospirillum ferriphilum with its evolutionary adaptation
2018 · External reference
Heterologous expression of ctsR from Oenococcus oeni enhances the acid-ethanol resistance of Lactobacillus plantarum
10.1093/femsle/fnz192 · 2019 · External reference
Microbial production of vitamin B5: current status and prospects
10.1080/07388551.2022.2104690 · 2023 · External reference
10.1093/nar/gkad328
10.1093/nar/gkad328 · External reference
