Research graph
References from Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications. Local targets link to admitted publications; unresolved targets remain external evidence.
NCBI GEO: archive for functional genomics data sets-update
10.1093/nar/gks1193 · 2013 · External reference
AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
10.1093/nar/30.1.207 · 2002 · External reference
10.1038/sdata.2016.18
10.1038/sdata.2016.18 · External reference
10.1093/nar/gky1061
10.1093/nar/gky1061 · External reference
METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI’s sequence read archive
10.1186/s12859-020-03694-0 · 2020 · External reference
Unresolved reference
2022 · External reference
GEOMetaCuration: a web-based application for accurate manual curation of Gene Expression Omnibus metadata
2018 · External reference
Unresolved reference
2019 · External reference
Unresolved reference
2016 · External reference
MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive
10.1093/bioinformatics/btx334 · 2017 · External reference
ALE: automated label extraction from GEO metadata
10.1186/s12859-017-1888-1 · 2017 · External reference
Restructured GEO: restructuring Gene Expression Omnibus metadata for genome dynamics analysis
2019 · External reference
TidyGEO: preparing analysis-ready datasets from Gene Expression Omnibus
2024 · External reference
10.1093/bioinformatics/btm254
10.1093/bioinformatics/btm254 · External reference
GEOmetadb: powerful alternative search engine for the gene expression omnibus
10.1093/bioinformatics/btn520 · 2008 · External reference
SpiderSeqR: an R package for crawling the web of high-throughput multi-omic data repositories for data-sets and annotation
2020 · External reference
Lung Cancer Explorer (LCE): an open web portal to explore gene expression and clinical associations in lung cancer
2018 · External reference
Expression Atlas: gene and protein expression across multiple studies and organisms
10.1093/nar/gkx1158 · 2018 · External reference
10.1093/nar/gkz1023
10.1093/nar/gkz1023 · External reference
Massive mining of publicly available RNA-seq data from human and mouse
10.1038/s41467-018-03751-6 · 2018 · External reference
Discovering and linking public omics data sets using the Omics Discovery Index
10.1038/nbt.3790 · 2017 · External reference
The DisGeNET knowledge platform for disease genomics: 2019 update
2020 · External reference
PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge
10.1093/nar/gkae235 · 2024 · External reference
LitSense 2.0: AI-powered biomedical information retrieval with sentence and passage level knowledge discovery
10.1093/nar/gkaf417 · 2025 · External reference
An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition
10.1186/s12859-015-0564-6 · 2015 · External reference
10.1093/nar/gkx965
10.1093/nar/gkx965 · External reference
TogoGenome/TogoStanza: modularized Semantic Web genome database
2019 · External reference
Biochat: a database for natural language processing of Gene Expression Omnibus data
2018 · External reference
10.1093/nar/gkq967
10.1093/nar/gkq967 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1007/978-3-662-44202-9_11
10.1007/978-3-662-44202-9_11 · 2014 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1093/nar/gkae1011
10.1093/nar/gkae1011 · External reference
MetaboLights: open data repository for metabolomics
10.1093/nar/gkad1045 · 2024 · External reference
