Research graph
References from CancerTrace : Multi-stage single-cell analysis of networked cancer evolution for driver and modulator gene identification. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1126/science.1235122
10.1126/science.1235122 · External reference
10.1038/nature12213
10.1038/nature12213 · External reference
10.1016/j.cell.2018.02.060
10.1016/j.cell.2018.02.060 · External reference
10.1038/nmeth.4463
10.1038/nmeth.4463 · External reference
Physics-informed AI with chemical master equation dynamics for driver-gene subclone detection and risk labeling
2025 · External reference
10.1103/physrevlett.85.461
10.1103/physrevlett.85.461 · External reference
Landscape and dynamics of single tumor and immune cells in early and advanced-stage lung adenocarcinoma
10.1002/ctm2.350 · 2021 · External reference
10.1186/s13045-019-0770-1
10.1186/s13045-019-0770-1 · External reference
10.1371/journal.pcbi.1013349 · Admitted local publication
DriverDBv4: a multi-omics integration database for cancer driver gene research
10.1093/nar/gkad1060 · 2024 · External reference
10.1093/bioinformatics/btt395
10.1093/bioinformatics/btt395 · External reference
DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer
10.1186/gb-2012-13-12-r124 · 2012 · External reference
10.1038/s41586-018-0414-6
10.1038/s41586-018-0414-6 · External reference
10.1038/s41587-020-0591-3
10.1038/s41587-020-0591-3 · External reference
10.1016/j.cell.2019.01.006
10.1016/j.cell.2019.01.006 · External reference
WGCNA: an R package for weighted correlation network analysis
10.1186/1471-2105-9-559 · 2008 · External reference
ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
10.1186/1471-2105-7-s1-s7 · 2006 · External reference
Cancer statistics, 2023
2023 · External reference
10.1038/s41467-020-16164-1
10.1038/s41467-020-16164-1 · External reference
10.1016/j.molcel.2015.04.005
10.1016/j.molcel.2015.04.005 · External reference
Single-cell RNA-sequencing uncovers the dynamic changes of tumour immune microenvironment in advanced lung adenocarcinoma
2023 · External reference
Highly proliferating cancer cells function as novel prognostic biomarkers for lung adenocarcinoma with particular usefulness for stage IA risk stratification
10.1186/s12885-024-13308-0 · 2025 · External reference
Single-cell analysis reveals altered tumor microenvironments of relapse-and remission-associated pediatric acute myeloid leukemia
10.1038/s41467-023-41994-0 · 2023 · External reference
10.1158/0008-5472.can-05-0626
10.1158/0008-5472.can-05-0626 · External reference
Tumor-initiating and metastasis-initiating cells of clear-cell renal cell carcinoma
10.1186/s12929-024-01111-9 · 2025 · External reference
Unresolved reference
2020 · External reference
Biology and clinical relevance of EpCAM
10.15698/cst2019.06.188 · 2019 · External reference
Understanding the versatile roles and applications of EpCAM in cancers: from bench to bedside
10.1186/s40164-022-00352-4 · 2022 · External reference
Unresolved reference
External reference
Evolving time series forecasting ARMA models
10.1023/b:heur.0000034714.09838.1e · 2004 · External reference
Unresolved reference
2014 · External reference
scGRN-Entropy: inferring cell differentiation trajectories using single-cell data and gene regulation network-based transfer entropy
10.1371/journal.pcbi.1012638 · 2024 · External reference
Fractional gaussian noise: spectral density and estimation methods
2024 · External reference
Typical algorithms for estimating hurst exponent of time sequence: a data analyst’s perspective
2024 · External reference
Hurst exponent estimation from short time series
10.1007/s11760-018-1353-2 · 2019 · External reference
TENET: gene network reconstruction using transfer entropy reveals key regulatory factors from single cell transcriptomic data
2021 · External reference
Unresolved reference
2024 · External reference
Gaussian process regression for survival time prediction with genome-wide gene expression
10.1093/biostatistics/kxz023 · 2021 · External reference
Unresolved reference
External reference
Unresolved reference
2013 · External reference
10.1093/bioinformatics/btr057
10.1093/bioinformatics/btr057 · External reference
10.1016/j.jbi.2022.104197
10.1016/j.jbi.2022.104197 · External reference
Unresolved reference
2015 · External reference
Unresolved reference
2021 · External reference
10.1201/9780429288340
10.1201/9780429288340 · 2022 · External reference
Monte Carlo MCMC: efficient inference by approximate sampling
2012 · External reference
CRAN: contributed packages
2016 · External reference
10.1093/bioinformatics/btab260
10.1093/bioinformatics/btab260 · External reference
Convergence across Chinese provinces: an analysis using Markov transition matrix
10.1016/j.chieco.2006.07.002 · 2008 · External reference
10.1016/j.cell.2018.05.061
10.1016/j.cell.2018.05.061 · External reference
Granger causality: a review and recent advances
10.1146/annurev-statistics-040120-010930 · 2022 · External reference
10.1523/jneurosci.4399-14.2015
10.1523/jneurosci.4399-14.2015 · External reference
Unresolved reference
2013 · External reference
Controlling the false discovery rate: a practical and powerful approach to multiple testing
10.1111/j.2517-6161.1995.tb02031.x · 1995 · External reference
SKCV: Stratified K-fold cross-validation on ML classifiers for predicting cervical cancer
10.3389/fnano.2022.972421 · 2022 · External reference
Receiver operating characteristic (ROC) methodology: the state of the art
1989 · External reference
Optimal design of gene knockout experiments for gene regulatory network inference
10.1093/bioinformatics/btv672 · 2016 · External reference
Unresolved reference
2000 · External reference
Investigating causal relations by econometric models and cross-spectral methods
10.2307/1912791 · 1969 · External reference
10.1093/acprof:oso/9780199641178.001.0001
10.1093/acprof:oso/9780199641178.001.0001 · 2012 · External reference
10.2307/j.ctv14jx6sm
10.2307/j.ctv14jx6sm · 2020 · External reference
10.1017/cbo9781139020411
10.1017/cbo9781139020411 · 2012 · External reference
10.1109/tit.1967.1053964
10.1109/tit.1967.1053964 · External reference
Unresolved reference
1962 · External reference
10.1038/nbt.4096
10.1038/nbt.4096 · External reference
Visualizing data using t-SNE
2008 · External reference
Principal component analysis: a review and recent developments
10.1098/rsta.2015.0202 · 2016 · External reference
10.1140/epjb/e2013-40829-0
10.1140/epjb/e2013-40829-0 · External reference
Unresolved reference
1992 · External reference
Multiple comparisons among means
10.1080/01621459.1961.10482090 · 1961 · External reference
10.1016/s1097-2765(01)00284-2
10.1016/s1097-2765(01)00284-2 · External reference
10.1158/0008-5472.can-08-2470
10.1158/0008-5472.can-08-2470 · External reference
10.3390/metabo8010019
10.3390/metabo8010019 · External reference
10.1093/bioinformatics/btq182
10.1093/bioinformatics/btq182 · External reference
Computational approaches for the identification of cancer genes and pathways
10.1002/wsbm.1364 · 2017 · External reference
10.1186/s13073-014-0056-8
10.1186/s13073-014-0056-8 · External reference
10.1038/s41467-017-02391-6
10.1038/s41467-017-02391-6 · External reference
10.1214/18-aos1755
10.1214/18-aos1755 · External reference
Promoter-level expression clustering identifies time development of transcriptional regulatory cascades initiated by ErbB receptors in breast cancer cells
10.1038/srep11999 · 2015 · External reference
10.1038/nm.3394
10.1038/nm.3394 · External reference
10.1016/j.cell.2011.02.013
10.1016/j.cell.2011.02.013 · External reference
10.1038/s41467-019-09186-x
10.1038/s41467-019-09186-x · External reference
10.1093/nar/gkx1013
10.1093/nar/gkx1013 · External reference
10.1016/j.tig.2012.01.006
10.1016/j.tig.2012.01.006 · External reference
10.1200/jco.2009.25.0977
10.1200/jco.2009.25.0977 · External reference
10.1038/nrc.2016.124
10.1038/nrc.2016.124 · External reference
Tumor protein 53-induced nuclear protein 1 enhances p53 function and represses tumorigenesis
2013 · External reference
10.1038/nrg2918
10.1038/nrg2918 · External reference
10.1007/s00262-007-0343-y
10.1007/s00262-007-0343-y · External reference
10.3390/cells14060403
10.3390/cells14060403 · External reference
Panning for gold:‘model-X’knockoffs for high dimensional controlled variable selection
10.1111/rssb.12265 · 2018 · External reference
10.1016/j.cell.2013.06.044
10.1016/j.cell.2013.06.044 · External reference
10.1002/0471142727.mb2129s109
10.1002/0471142727.mb2129s109 · External reference
10.1016/j.molcel.2011.08.027
10.1016/j.molcel.2011.08.027 · External reference
10.1038/s41592-022-01409-2
10.1038/s41592-022-01409-2 · External reference
10.1038/nmeth.4437
10.1038/nmeth.4437 · External reference
10.1038/nmeth.4380
10.1038/nmeth.4380 · External reference
10.1016/j.cell.2016.11.038
10.1016/j.cell.2016.11.038 · External reference