Research graph
References from GenPath-PPH: Integrating gene expression and pathway networks via persistent path homology enhances detection of disease-relevant pathways. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/j.bbamcr.2016.01.025
10.1016/j.bbamcr.2016.01.025 · External reference
Understanding disease mechanisms with models of signaling pathway activities
10.1186/s12918-014-0121-3 · 2014 · External reference
Unresolved reference
1935 · External reference
10.1093/nar/gkn923
10.1093/nar/gkn923 · External reference
10.1093/bioinformatics/btab847
10.1093/bioinformatics/btab847 · External reference
10.1073/pnas.0506580102
10.1073/pnas.0506580102 · External reference
10.1371/journal.pcbi.1002375
10.1371/journal.pcbi.1002375 · External reference
A systems Biology approach for pathway level analysis
10.1101/gr.6202607 · 2007 · External reference
Pathnet: a tool for pathway analysis using topological information
10.1186/1751-0473-7-10 · 2012 · External reference
On testing the significance of sets of genes
2007 · External reference
Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling
10.1186/1752-0509-8-56 · 2014 · External reference
10.1093/bioinformatics/btn577
10.1093/bioinformatics/btn577 · External reference
10.1038/msb.2011.99
10.1038/msb.2011.99 · External reference
10.1002/dvdy.175
10.1002/dvdy.175 · External reference
10.1016/j.jbi.2022.104082
10.1016/j.jbi.2022.104082 · External reference
10.1016/j.bbadis.2018.02.010
10.1016/j.bbadis.2018.02.010 · External reference
10.1090/s0273-0979-09-01249-x
10.1090/s0273-0979-09-01249-x · External reference
10.1007/s00454-002-2885-2
10.1007/s00454-002-2885-2 · External reference
Unresolved reference
2018 · External reference
Homotopy theory for digraphs
2014 · External reference
Persistence homology of networks: Methods and applications
10.1007/s41109-019-0179-3 · 2019 · External reference
10.1021/acs.jpclett.2c03706
10.1021/acs.jpclett.2c03706 · External reference
10.1038/cdd.2017.169
10.1038/cdd.2017.169 · External reference
10.1007/s13238-012-2018-5
10.1007/s13238-012-2018-5 · External reference
10.1093/nar/28.1.27
10.1093/nar/28.1.27 · External reference
Path complexes and their homologies
10.1007/s10958-020-04897-9 · 2020 · External reference
RNA-seq profiling reveals PBMC RNA as a potential biomarker for hepatocellular carcinoma
10.1038/s41598-021-96952-x · 2021 · External reference
Measurement of mrna abundance using RNA-seq data: RPKM measure is inconsistent among samples
10.1007/s12064-012-0162-3 · 2012 · External reference
10.1093/bioinformatics/btp616
10.1093/bioinformatics/btp616 · External reference
Persistent homology identifies pathways associated with hepatocellular carcinoma from peripheral blood samples
10.3390/math12050725 · 2024 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1093/bioinformatics/btp163
10.1093/bioinformatics/btp163 · External reference
Comparison of co-expression measures: mutual information, correlation, and model based indices
10.1186/1471-2105-13-328 · 2012 · External reference
10.1111/j.2517-6161.1995.tb02031.x
10.1111/j.2517-6161.1995.tb02031.x · External reference
10.1038/s41592-019-0686-2
10.1038/s41592-019-0686-2 · External reference
10.1186/s13059-014-0550-8
10.1186/s13059-014-0550-8 · External reference
10.1093/bioinformatics/btac757
10.1093/bioinformatics/btac757 · External reference
Hepatocellular carcinoma: molecular mechanisms and targeted therapies
10.3390/medicina55090526 · 2019 · External reference
10.3390/cancers16050850
10.3390/cancers16050850 · External reference
Prolactin promotes hepatocellular carcinoma through Janus Kinase 2
10.1007/s00268-012-1505-4 · 2012 · External reference
10.1016/j.biocel.2017.05.031
10.1016/j.biocel.2017.05.031 · External reference
10.3390/cells5020015
10.3390/cells5020015 · External reference
10.1038/s12276-022-00765-5
10.1038/s12276-022-00765-5 · External reference
10.3390/cimb44070207
10.3390/cimb44070207 · External reference
Potential prognostic biomarkers of hepatocellular carcinoma based on 4d label-free quantitative proteomics analysis pilot investigation
10.1177/03936155231212925 · 2024 · External reference
Development and validation of a coagulation-related genes prognostic model for hepatocellular carcinoma
10.1186/s12859-023-05220-4 · 2023 · External reference
Novel prognostic model of complement and coagulation cascade-related genes correlates with immune environment and drug sensitivity in hepatocellular carcinoma
2024 · External reference
Role of coagulation factors in hepatocellular carcinoma: a literature review
10.3390/life15010034 · 2024 · External reference
Statistical topological data analysis using persistence landscapes
2015 · External reference
10.1016/j.jsc.2016.03.009
10.1016/j.jsc.2016.03.009 · External reference
A tissue-specific and toxicology-focused knowledge graph
10.3390/info14020091 · 2023 · External reference
