Research graph
References from Self-supervised domain adaptation of protein language model based solely on positive enzyme-reaction pairs. Local targets link to admitted publications; unresolved targets remain external evidence.
10.3390/catal8060238
10.3390/catal8060238 · External reference
Biocatalytic enzymes in food packaging, biomedical, and biotechnological applications: a comprehensive review
10.1016/j.ijbiomac.2025.140069 · 2025 · External reference
Recent advances in enzymes for the bioremediation of pollutants
10.1155/2021/5599204 · 2021 · External reference
10.1021/acscentsci.3c01275
10.1021/acscentsci.3c01275 · External reference
10.1002/prot.26019
10.1002/prot.26019 · External reference
Machine learning-based prediction of activity and substrate specificity for OleA enzymes in the thiolase superfamily
10.1093/synbio/ysaa004 · 2020 · External reference
Functional and informatics analysis enables glycosyltransferase activity prediction
10.1038/s41589-018-0154-9 · 2018 · External reference
10.1371/journal.pcbi.1000636
10.1371/journal.pcbi.1000636 · External reference
10.1371/journal.pcbi.1009853
10.1371/journal.pcbi.1009853 · External reference
10.1038/s41467-023-38347-2
10.1038/s41467-023-38347-2 · External reference
ReactZyme: a benchmark for enzyme-reaction prediction
2024 · External reference
10.1038/s41467-023-39840-4
10.1038/s41467-023-39840-4 · External reference
Language models can identify enzymatic binding sites in protein sequences
10.1016/j.csbj.2024.04.012 · 2024 · External reference
10.1016/j.sbi.2017.11.001
10.1016/j.sbi.2017.11.001 · External reference
Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences
10.1073/pnas.2016239118 · 2021 · External reference
UniProt: the universal protein knowledgebase in 2023
10.1093/nar/gkac1052 · 2023 · External reference
Rhea, the reaction knowledgebase in 2022
10.1093/nar/gkab1016 · 2022 · External reference
Enzyme annotation in UniProtKB using Rhea
10.1093/bioinformatics/btz817 · 2020 · External reference
The MetaCyc database of metabolic pathways and enzymes - a 2019 update
10.1093/nar/gkz862 · 2020 · External reference
Unresolved reference
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10.1039/d3sc02048g
10.1039/d3sc02048g · External reference
Unresolved reference
2024 · External reference
10.1093/bioinformatics/btl158
10.1093/bioinformatics/btl158 · External reference
Biocatalysed synthesis planning using data-driven learning
10.1038/s41467-022-28536-w · 2022 · External reference
10.18653/v1/2020.emnlp-demos.6
10.18653/v1/2020.emnlp-demos.6 · External reference
Unresolved reference
2020 · External reference
Unresolved reference
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Unresolved reference
2019 · External reference
Unresolved reference
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BRENDA, the ELIXIR core data resource in 2021: new developments and updates
10.1093/nar/gkaa1025 · 2021 · External reference
SABIO-RK: an updated resource for manually curated biochemical reaction kinetics
10.1093/nar/gkx1065 · 2018 · External reference
10.1021/acscentsci.9b00835
10.1021/acscentsci.9b00835 · External reference
10.1038/nchembio.1387
10.1038/nchembio.1387 · External reference
Panoramic view of a superfamily of phosphatases through substrate profiling
10.1073/pnas.1423570112 · 2015 · External reference
Determinants and prediction of esterase substrate promiscuity patterns
10.1021/acschembio.7b00996 · 2017 · External reference
10.1145/3292500.3330701
10.1145/3292500.3330701 · 2019 · External reference
10.1093/nar/gkaa977
10.1093/nar/gkaa977 · External reference
10.1093/bioinformatics/btu031
10.1093/bioinformatics/btu031 · External reference
10.1093/nar/gkaa913
10.1093/nar/gkaa913 · External reference
