Research graph
References from PolyA-GLM: A comprehensive framework for De novo polyadenylation site prediction using genome language models. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1101/gad.17268411
10.1101/gad.17268411 · External reference
Analyses of alternative polyadenylation: from old school biochemistry to high-throughput technologies
10.5483/bmbrep.2017.50.4.019 · 2017 · External reference
10.1016/j.gendis.2019.10.011
10.1016/j.gendis.2019.10.011 · External reference
Dipan: detecting personalized intronic polyadenylation derived neoantigens from rna sequencing data
10.1016/j.csbj.2024.05.008 · 2024 · External reference
10.1038/nrm.2016.116
10.1038/nrm.2016.116 · External reference
10.1093/nar/gky340
10.1093/nar/gky340 · External reference
10.1101/gr.10.7.1001
10.1101/gr.10.7.1001 · External reference
10.1093/nar/gki158
10.1093/nar/gki158 · External reference
Computational methods for alternative polyadenylation and splicing in post-transcriptional gene regulation
2025 · External reference
APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data
10.1093/bioinformatics/bty029 · 2018 · External reference
APA-Scan: detection and visualization of 3, -UTR alternative polyadenylation with RNA-seq and 3, -end-seq data
10.1186/s12859-022-04939-w · 2022 · External reference
Poly (A) motif prediction using spectral latent features from human DNA sequences
10.1093/bioinformatics/btt218 · 2013 · External reference
Dragon PolyA Spotter: predictor of poly (A) motifs within human genomic DNA sequences
10.1093/bioinformatics/btr602 · 2012 · External reference
mRNA 3’-UTR shortening is a molecular signature of mTORC1 activation
10.1038/ncomms8218 · 2015 · External reference
10.1093/bioinformatics/btab083
10.1093/bioinformatics/btab083 · External reference
Unresolved reference
External reference
Nucleotide transformer: building and evaluating robust foundation models for human genomics
2024 · External reference
Hyenadna: long-range genomic sequence modeling at single nucleotide resolution
2023 · External reference
10.1016/j.csbj.2023.11.025 · Admitted local publication
Unresolved reference
External reference
Sequence determinants in human polyadenylation site selection
10.1186/1471-2164-4-7 · 2003 · External reference
QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data
2018 · External reference
Unresolved reference
External reference
10.1126/science.ado9336
10.1126/science.ado9336 · External reference
10.1016/j.csbj.2024.05.025 · Admitted local publication
10.1093/nar/gky955
10.1093/nar/gky955 · External reference
Signals for pre-mRNA cleavage and polyadenylation
10.1002/wrna.116 · 2012 · External reference
PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3, end sequencing
2020 · External reference
10.1101/gr.202432.115
10.1101/gr.202432.115 · External reference
Point mutations in AAUAAA and the poly (A) addition site: effects on the accuracy and efficiency of cleavage and polyadenylation in vitro
10.1093/nar/18.19.5799 · 1990 · External reference
Crystal structure of mammalian poly (A) polymerase in complex with an analog of ATP
10.1093/emboj/19.16.4193 · 2000 · External reference
10.1016/j.molcel.2008.12.028
10.1016/j.molcel.2008.12.028 · External reference
10.1101/gr.132563.111
10.1101/gr.132563.111 · External reference
Interpreting attention mechanisms in genomic transformer models: a framework for biological insights
2025 · External reference
10.1038/s12276-024-01289-w
10.1038/s12276-024-01289-w · External reference
10.3390/ijms232012416
10.3390/ijms232012416 · External reference
IPScan: detecting novel intronic polyadenylation events with RNA-seq data
10.1371/journal.pcbi.1013668 · 2025 · External reference
