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References from BLMPred: Predicting linear B-cell epitopes using pre-trained protein language models and machine learning. Local targets link to admitted publications; unresolved targets remain external evidence.
Organism-specific training improves performance of linear B-cell epitope prediction
10.1093/bioinformatics/btab536 · 2021 · External reference
Immunoinformatic design of a COVID-19 subunit vaccine using entire structural immunogenic epitopes of SARS-CoV-2
10.1038/s41598-020-77547-4 · 2020 · External reference
Xgboost: a scalable tree boosting system
2016 · External reference
10.1186/s13040-017-0155-3
10.1186/s13040-017-0155-3 · External reference
The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation
10.1186/s12864-019-6413-7 · 2020 · External reference
10.1002/pro.4497
10.1002/pro.4497 · External reference
EpiDope: a deep neural network for linear B-cell epitope prediction
10.1093/bioinformatics/btaa773 · 2020 · External reference
epitope1D: accurate taxonomy-aware B-cell linear epitope prediction
10.1093/bib/bbad114 · 2023 · External reference
Unresolved reference
2014 · External reference
INDI—integrated nanobody database for immunoinformatics
10.1093/nar/gkab1021 · 2022 · External reference
Prottrans: toward understanding the language of life through self-supervised learning
10.1109/tpami.2021.3095381 · 2021 · External reference
Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide
10.1128/jvi.55.3.836-839.1985 · 1985 · External reference
Unresolved reference
2020 · External reference
10.1016/j.csbj.2024.01.015 · Admitted local publication
10.1093/bioinformatics/btq003
10.1093/bioinformatics/btq003 · External reference
10.1093/nar/gkx346
10.1093/nar/gkx346 · External reference
10.1016/j.csbj.2024.05.029
10.1016/j.csbj.2024.05.029 · External reference
10.1016/0014-5793(90)80535-q
10.1016/0014-5793(90)80535-q · External reference
10.1038/s41598-018-33298-x
10.1038/s41598-018-33298-x · External reference
10.1126/science.ade2574
10.1126/science.ade2574 · External reference
Prediction of linear B-cell epitopes based on protein sequence features and BERT embeddings
10.1038/s41598-024-53028-w · 2024 · External reference
LBCE-XGB: a XGBoost model for predicting linear B-Cell epitopes based on BERT embeddings
10.1007/s12539-023-00549-z · 2023 · External reference
10.1093/nar/gkac240
10.1093/nar/gkac240 · External reference
iBCE-EL: a new ensemble learning framework for improved linear B-cell epitope prediction
10.3389/fimmu.2018.01695 · 2018 · External reference
10.1371/journal.pntd.0005972
10.1371/journal.pntd.0005972 · External reference
10.1016/j.csbj.2023.01.046
10.1016/j.csbj.2023.01.046 · External reference
Unresolved reference
2021 · External reference
Unresolved reference
External reference
BEPITOPE: predicting the location of continuous epitopes and patterns in proteins
10.1002/jmr.602 · 2003 · External reference
10.1021/bi00367a013
10.1021/bi00367a013 · External reference
Scikit-learn: Machine learning in Python
2011 · External reference
Prediction of B cell epitopes in proteins using a novel sequence similarity-based method
10.1038/s41598-022-18021-1 · 2022 · External reference
Unresolved reference
2004 · External reference
Harnessing computational biology for exact linear B-cell epitope prediction: a novel amino acid composition-based feature descriptor
10.1089/omi.2015.0095 · 2015 · External reference
10.1016/j.bbapap.2014.07.006
10.1016/j.bbapap.2014.07.006 · External reference
Language models can identify enzymatic binding sites in protein sequences
10.1016/j.csbj.2024.04.012 · 2024 · External reference
10.1016/j.csbj.2024.06.005 · Admitted local publication
10.1093/nar/gky1006
10.1093/nar/gky1006 · External reference
10.1016/j.csbj.2023.12.004 · 2024 · Admitted local publication
10.1016/j.csbj.2024.05.023 · 2024 · Admitted local publication
10.1016/j.csbj.2023.11.037
10.1016/j.csbj.2023.11.037 · External reference
SVMTriP: a method to predict B-cell linear antigenic epitopes
10.1007/978-1-0716-0389-5_17 · 2020 · External reference
B and T cell epitope-based peptides predicted from evolutionarily conserved and whole protein sequences of Ebola virus as vaccine targets
10.1111/sji.12425 · 2016 · External reference
10.1016/j.csbj.2023.10.050 · Admitted local publication
Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model
10.1093/bioinformatics/btad187 · 2023 · External reference
10.1016/j.csbj.2023.11.041 · Admitted local publication
