References

Paleogenomics reveals a loss of bovine lineages in mid-latitude Asia over the last 200,000 years

10.1093/gbe/evaf206 · 2025 · External reference

Genetic history of an archaic hominin group from Denisova Cave in Siberia

10.1038/nature09710 · 2010 · External reference

Evolutionary patterns and processes: lessons from ancient DNA

2017 · External reference

Million-year-old DNA sheds light on the genomic history of mammoths

10.1038/s41586-021-03224-9 · 2021 · External reference

Refugial ecosystems in central Asia as indicators of biodiversity change during the Pleistocene–Holocene transition

10.1016/j.ecolind.2016.12.033 · 2017 · External reference

Postglacial history of the Steppe Altai: Climate, fire and plant diversity

10.1016/j.quascirev.2020.106616 · 2020 · External reference

On time and environment of Stephanorhinus kirchbergensis Jäger 1839 (Mammalia, Rhinoceratidae) in Altai and Northeastern Russia

10.1134/s1062359021090077 · 2021 · External reference

Complete mitochondrial genome of an extinct Equus (Sussemionus) ovodovi specimen from Denisova cave (Altai, Russia)

10.1080/23802359.2017.1285209 · 2017 · External reference

Ecological structure of recent and Last Glacial mammalian faunas in Northern Eurasia: The case of Altai-Sayan refugium

10.1371/journal.pone.0085056 · 2014 · External reference

Complex admixture preceded and followed the extinction of wisent in the wild

2017 · External reference

Pervasive introgression facilitated domestication and adaptation in the Bos species complex

10.1038/s41559-018-0562-y · 2018 · External reference

Incomplete lineage sorting rather than hybridization explains the inconsistent phylogeny of the wisent

10.1038/s42003-018-0176-6 · 2018 · External reference

Timing of archaic hominin occupation of Denisova Cave in southern Siberia

10.1038/s41586-018-0843-2 · 2019 · External reference

Pleistocene chronology and history of hominins and fauna at Denisova Cave

10.1038/s41467-025-60140-6 · 2025 · External reference

Age estimates for hominin fossils and the onset of the Upper Palaeolithic at Denisova Cave

10.1038/s41586-018-0870-z · 2019 · External reference

Bos grunniens and Bos mutus (Artiodactyla: Bovidae)

10.1644/836.1 · 2009 · External reference

Evidence for early domestic yak, taurine cattle, and their hybrids on the Tibetan Plateau

10.1126/sciadv.adi6857 · 2023 · External reference

Biogeographic connections between the flora of the Arctic and Qinghai-Tibet Plateau: building on the legacy of Richard Abbott

10.1080/17550874.2025.2544674 · 2025 · External reference

Molecular phylogeography of the red deer (Cervus elaphus) populations in Xinjiang of China: Comparison with other Asian, European, and North American populations

10.2108/zsj.19.485 · 2002 · External reference

Molecular systematics of the Sicista tianschanica species complex: a contribution from historical DNA analysis

10.7717/peerj.10759 · 2021 · External reference

Phylogeography of the Altai weasel (Carnivora: Mustelidae: Mustela altaica) based on an analysis of mitochondrial control-region haplotypes

10.1093/biolinnean/blac148 · 2023 · External reference

Environmental conditions in northwestern Russia during MIS 5 inferred from the pollen stratigraphy in a sediment core from Lake Ladoga

10.1111/bor.12382 · 2019 · External reference

Marine Isotope Stage 11c: An unusual interglacial

10.1016/j.quascirev.2022.107493 · 2022 · External reference

Terrestrial environments during MIS 11: evidence from the Palaeolithic site at West Stow, Suffolk, UK

10.1016/j.quascirev.2006.11.016 · 2007 · External reference

Natural variability of Greenland climate, vegetation, and ice volume during the past million years

10.1126/science.1153929 · 2008 · External reference

Deglaciation of northwestern Greenland during Marine Isotope Stage 11

10.1126/science.ade4248 · 2023 · External reference

Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears

10.1016/j.cell.2014.03.054 · 2014 · External reference

A gradual change is more likely to have caused the Mid-Pleistocene Transition than an abrupt event

10.1038/s43247-023-00754-0 · 2023 · External reference

The progressive evolution of cold-adapted species

10.1016/j.tree.2025.04.005 · 2025 · External reference

The genome of the offspring of a Neanderthal mother and a Denisovan father

10.1038/s41586-018-0455-x · 2018 · External reference

Remains of the Baikal yak (Poehpagus mutus baikalensis N. Verestchagin, 1954) from Late Pleistocene localities of Southern Siberia

2021 · External reference

Baikal yak (Poёphagus baikalensis n. ver., sp. nova, Mammalia) from the Pleistocene fauna of Eastern Siberia

1954 · External reference

Zur geographischen Verbreitung der Gattung Poephagus im Pleistozän und Holozän

1980 · External reference

Refugia revisited: individualistic responses of species in space and time

2009 · External reference

The presence and impact of reference bias on population genomic studies of prehistoric human populations

10.1371/journal.pgen.1008302 · 2019 · External reference

Unravelling reference bias in ancient DNA datasets

10.1093/bioinformatics/btae436 · 2024 · External reference

Late Quaternary megafaunal extinctions on the continents: a short review

10.1002/gj.2633 · 2015 · External reference

A fast and efficient single-stranded genomic library preparation method optimized for ancient DNA

10.1093/jhered/esab012 · 2021 · External reference

Illumina sequencing library preparation for highly multiplexed target capture and sequencing

10.1101/pdb.prot5448 · 2010 · External reference

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

10.1093/nar/gkr771 · 2012 · External reference

Trimmomatic: a flexible trimmer for Illumina sequence data

10.1093/bioinformatics/btu170 · 2014 · External reference

Fast and accurate short read alignment with Burrows–Wheeler transform

10.1093/bioinformatics/btp324 · 2009 · External reference

mapDamage: testing for damage patterns in ancient DNA sequences

10.1093/bioinformatics/btr347 · 2011 · External reference

Genomics in the Cloud: Using Docker

2020 · External reference

snpAD: an ancient DNA genotype caller

10.1093/bioinformatics/bty507 · 2018 · External reference

Twelve years of SAMtools and BCFtools

10.1093/gigascience/giab008 · 2021 · External reference

MUSCLE: multiple sequence alignment with high accuracy and high throughput

10.1093/nar/gkh340 · 2004 · External reference

Yersinia pestis genomes reveal plague in Britain 4000 years ago

10.1038/s41467-023-38393-w · 2023 · External reference

IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

10.1093/molbev/msu300 · 2015 · External reference

Bayesian phylogenetics with BEAUti and the BEAST 1.7

10.1093/molbev/mss075 · 2012 · External reference

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood

10.1080/10635150390235520 · 2003 · External reference

Posterior summarization in Bayesian phylogenetics using Tracer 1.7

10.1093/sysbio/syy032 · 2018 · External reference

Paleogenomic insight into the collapse, recovery, and management of American bison

10.1126/science.aee4205 · 2026 · External reference

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

10.1093/bioinformatics/bty633 · 2019 · External reference

On the limits of fitting complex models of population history to f-statistics

10.7554/elife.85492 · 2023 · External reference

MSMC and MSMC2: The Multiple Sequentially Markovian Coalescent

10.1007/978-1-0716-0199-0_7 · 2020 · External reference

Joint estimates of heterozygosity and runs of homozygosity for modern and ancient samples

10.1534/genetics.119.302057 · 2019 · External reference

Zooarchaeology through the lens of collagen fingerprinting at Denisova Cave

10.1038/s41598-021-94731-2 · 2021 · External reference

The IntCal20 Northern Hemisphere radiocarbon age calibration curve (0–55 cal kBP)

10.1017/rdc.2020.41 · 2020 · External reference

Structural variants selected during yak domestication inferred from long-read whole-genome sequencing

10.1093/molbev/msab134 · 2021 · External reference

A chromosome-scale reference genome and genome-wide genetic variations elucidate adaptation in yak

10.1111/1755-0998.13236 · 2021 · External reference

Whole-genome analysis of introgressive hybridization and characterization of the bovine legacy of Mongolian yaks

10.1038/ng.3775 · 2017 · External reference

Evolutionary origin of genomic structural variations in domestic yaks

2023 · External reference

Genetic diversity, molecular phylogeny, and selection evidence of Jinchuan yak revealed by whole-genome resequencing

10.1534/g3.118.300572 · 2018 · External reference

Yak whole-genome resequencing reveals domestication signatures and prehistoric population expansions

10.1038/ncomms10283 · 2015 · External reference

Dissecting genomes of multiple yak populations: unveiling ancestry and high-altitude adaptation through whole-genome resequencing analysis

10.1186/s12864-025-11387-2 · 2025 · External reference

Ancient cattle genomics, origins, and rapid turnover in the Fertile Crescent

10.1126/science.aav1002 · 2019 · External reference

Ancient genomes reveal tropical bovid species in the Tibetan Plateau contributed to the prevalence of hunting game until the late Neolithic

10.1073/pnas.2011696117 · 2020 · External reference

The genome sequence of the wisent (Bison bonasus)

10.1093/gigascience/gix016 · 2017 · External reference

Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment

10.1016/j.cub.2021.06.023 · 2021 · External reference

A reference genome assembly of American bison, Bison bison bison

10.1093/jhered/esab003 · 2021 · External reference

Development of SNP-Based genomic tools for the Canadian bison industry: Parentage verification and subspecies composition

10.3389/fgene.2020.585999 · 2020 · External reference

Most Beefalo cattle have no detectable bison genetic ancestry

2026 · External reference

De novo assembly of the cattle reference genome with single-molecule sequencing

10.1093/gigascience/giaa021 · 2020 · External reference

Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with pulmonary hypertension

2016 · External reference

Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

10.1186/s13059-015-0790-2 · 2015 · External reference

The genomic natural history of the aurochs

10.1038/s41586-024-08112-6 · 2024 · External reference

Genomic analyses reveal distinct genetic architectures and selective pressures in buffaloes

10.1093/gigascience/giz166 · 2020 · External reference

Combining bleach and mild predigestion improves ancient DNA recovery from bones

10.1111/1755-0998.12623 · 2017 · External reference

Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing

10.1038/s41596-018-0050-5 · 2018 · External reference

A high-throughput ancient DNA extraction method for large-scale sample screening

10.1111/1755-0998.14077 · 2025 · External reference

Extraction of highly degraded DNA from ancient bones and teeth

10.1007/978-1-4939-9176-1_4 · 2019 · External reference

A computational approach for positive genetic identification and relatedness detection from low-coverage shotgun sequencing data

10.1093/jhered/esad041 · 2023 · External reference

Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM

2013 · External reference

Phylogeographical analyses of domestic and wild yaks based on mitochondrial DNA: new data and reappraisal

10.1111/j.1365-2699.2010.02379.x · 2010 · External reference

Characterization of the complete mitochondrial genome sequence of wild yak (Bos mutus)

2016 · External reference

Characterization of the complete mitochondrial genome sequence of golden wild yak and revealed its phylogenetic relationship with 9 yak subspecies

10.1080/23802359.2019.1568215 · 2019 · External reference

Complete mitochondrial DNA sequence analysis of Bison bison and bison-cattle hybrids: function and phylogeny

10.1016/j.mito.2010.09.005 · 2011 · External reference

An ancient bison from the mouth of the Rauchua River (Chukotka, Russia)

10.1016/j.yqres.2015.06.003 · 2015 · External reference

Fossil and genomic evidence constrains the timing of bison arrival in North America

10.1073/pnas.1620754114 · 2017 · External reference

ModelFinder: fast model selection for accurate phylogenetic estimates

10.1038/nmeth.4285 · 2017 · External reference

jModelTest 2: more models, new heuristics and parallel computing

10.1038/nmeth.2109 · 2012 · External reference

Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool

10.1093/nar/gkae268 · 2024 · External reference

Ancient DNA-based sex determination of bison hide moccasins indicates Promontory cave occupants selected female hides for footwear

10.1016/j.jas.2021.105533 · 2022 · External reference

Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia

2018 · External reference

Deleterious mutations and the evolution of sex

10.1126/science.290.5490.331 · 2000 · External reference

Deciphering the wisent demographic and adaptive histories from individual whole-genome sequences

10.1093/molbev/msw144 · 2016 · External reference

Grey wolf genomic history reveals a dual ancestry of dogs

10.1038/s41586-022-04824-9 · 2022 · External reference