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References from Microbial traits, necromass accumulation, and soil carbon persistence are shaped by oil palm-based agroforestry in the Amazon. Local targets link to admitted publications; unresolved targets remain external evidence.
Stabilized microbial necromass in soil is more strongly coupled with microbial diversity than the bioavailability of plant inputs
10.1016/j.soilbio.2024.109323 · 2024 · External reference
Unlocking complex soil systems as carbon sinks: multi-pool management as the key
10.1038/s41467-023-38700-5 · 2023 · External reference
Un(der)explored links between plant diversity and particulate and mineral-associated organic matter in soil
10.1038/s41467-025-60712-6 · 2025 · External reference
The automated determination of glucosamine, galactosamine, muramic acid, and mannosamine in soil and root hydrolysates by HPLC
10.1002/jpln.200321302 · 2004 · External reference
Leaf litter species affects decomposition rate and nutrient release in a cocoa plantation
10.1016/j.agee.2021.107705 · 2022 · External reference
10.1126/science.abo2380
10.1126/science.abo2380 · External reference
10.1016/j.rhisph.2023.100736
10.1016/j.rhisph.2023.100736 · External reference
Fitting linear mixed-effects models using lme4
10.18637/jss.v067.i01 · 2015 · External reference
A global meta-analysis of soil organic carbon in the Anthropocene
10.1038/s41467-023-39338-z · 2023 · External reference
Oil palm land conversion in Pará, Brazil, from 2006–2014: evaluating the 2010 Brazilian sustainable palm oil production program
10.1088/1748-9326/aaa270 · 2018 · External reference
Implications of smallholder livelihoods for scaling oil palm agroforestry in Brazilian Eastern Amazon
10.1016/j.wds.2024.100128 · 2024 · External reference
Deconstructing the microbial necromass continuum to inform soil carbon sequestration
10.1111/1365-2435.14014 · 2022 · External reference
Sticky dead microbes: rapid abiotic retention of microbial necromass in soil
10.1016/j.soilbio.2020.107929 · 2020 · External reference
Environmental and microbial controls on microbial necromass recycling, an important precursor for soil carbon stabilization
10.1038/s43247-020-00031-4 · 2020 · External reference
DADA2: high-resolution sample inference from Illumina amplicon data
10.1038/nmeth.3869 · 2016 · External reference
Particulate soil organic‐matter changes across a grassland cultivation sequence
10.2136/sssaj1992.03615995005600030017x · 1992 · External reference
Partial least squares regression as an alternative to current regression methods used in ecology
10.1111/j.1600-0706.2008.16881.x · 2009 · External reference
Short-term changes in the soil carbon stocks of young oil palm-based agroforestry systems in the eastern Amazon
10.1007/s10457-014-9689-2 · 2014 · External reference
10.36783/18069657rbcs20220130
10.36783/18069657rbcs20220130 · External reference
10.1007/s10457-023-00832-4
10.1007/s10457-023-00832-4 · External reference
Soil carbon storage informed by particulate and mineral-associated organic matter
10.1038/s41561-019-0484-6 · 2019 · External reference
The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?
10.1111/gcb.12113 · 2013 · External reference
10.1080/01904167.2022.2058541
10.1080/01904167.2022.2058541 · External reference
Oil palm agroforestry systems store more carbon and nitrogen in soil aggregates than monoculture in the Amazon
10.1007/s11027-024-10166-w · 2024 · External reference
Plant diversity drives positive microbial associations in the rhizosphere enhancing carbon use efficiency in agricultural soils
10.1038/s41467-024-52449-5 · 2024 · External reference
Unresolved reference
External reference
Unresolved reference
2014 · External reference
10.1016/j.geodrs.2024.e00806
10.1016/j.geodrs.2024.e00806 · External reference
Soil properties in agricultural systems affect microbial genomic traits
10.1093/femsmc/xtaf008 · 2025 · External reference
Palm oil expansion in Malaysia and its countermeasures through policy window and biorefinery approach
10.1016/j.envsci.2024.103671 · 2024 · External reference
Simultaneous inference in general parametric models
10.1002/bimj.200810425 · 2008 · External reference
Microbial necromass under global change and implications for soil organic matter
10.1111/gcb.16676 · 2023 · External reference
Optimisation of amino sugar quantification by HPLC in soil and plant hydrolysates
10.1007/s00374-011-0545-5 · 2011 · External reference
Tree roots exert greater influence on soil microbial necromass carbon than above-ground litter in subtropical natural and plantation forests
10.1016/j.soilbio.2022.108811 · 2022 · External reference
Amino sugars as specific indices for fungal and bacterial residues in soil
10.1007/s00374-018-1288-3 · 2018 · External reference
Carbon sequestration of forest soils is reflected by changes in physicochemical soil indicators ─ a comprehensive discussion of a long-term experiment on a detritus manipulation
10.1016/j.geoderma.2020.114918 · 2021 · External reference
Unresolved reference
2023 · External reference
Microbial hotspots and hot moments in soil: concept & review
10.1016/j.soilbio.2015.01.025 · 2015 · External reference
Increased soil carbon storage through plant diversity strengthens with time and extends into the subsoil
10.1111/gcb.16641 · 2023 · External reference
Plant diversity increases soil microbial activity and soil carbon storage
10.1038/ncomms7707 · 2015 · External reference
Conceptualizing soil organic matter into particulate and mineral‐associated forms to address global change in the 21st century
10.1111/gcb.14859 · 2020 · External reference
piecewiseSEM: piecewise structural equationmodelling in R for ecology, evolution, and systematics
10.1111/2041-210x.12512 · 2016 · External reference
Unresolved reference
External reference
Quantitative assessment of microbial necromass contribution to soil organic matter
10.1111/gcb.14781 · 2019 · External reference
microeco: an R package for data mining in microbial community ecology
10.1093/femsec/fiaa255 · 2021 · External reference
Microbial habitat specificity largely affects microbial co-occurrence patterns and functional profiles in wetland soils
10.1016/j.geoderma.2022.115866 · 2022 · External reference
Land use driven change in soil pH affects microbial carbon cycling processes
10.1038/s41467-018-05980-1 · 2018 · External reference
Soil microbial communities with greater investment in resource acquisition have lower growth yield
10.1016/j.soilbio.2019.01.025 · 2019 · External reference
Cutadapt removes adapter sequences from high-throughput sequencing reads
10.14806/ej.17.1.200 · 2011 · External reference
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
10.1371/journal.pone.0061217 · 2013 · External reference
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
10.1111/1574-6976.12028 · 2013 · External reference
10.1101/2024.09.08.611926
10.1101/2024.09.08.611926 · External reference
Deep learning for predicting 16S rRNA gene copy number
10.1038/s41598-024-64658-5 · 2024 · External reference
Plant species richness and legume presence increase microbial necromass carbon accumulation
10.1016/j.agee.2024.109196 · 2024 · External reference
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
10.1093/nar/gky1022 · 2019 · External reference
Unresolved reference
External reference
Management practices affect soil carbon and physical quality in oil palm agroforestry systems in the amazon
10.1007/s42729-022-00947-0 · 2022 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Characterization of açaí (E. oleracea) fruits and its processing residues
10.1590/s1516-89132010000600022 · 2010 · External reference
Unresolved reference
External reference
Agroforestry and the improvement of soil fertility: a view from amazonia
10.1155/2012/616383 · 2012 · External reference
Life history strategies of soil bacterial communities across global terrestrial biomes
10.1038/s41564-023-01465-0 · 2023 · External reference
Increased microbial growth, biomass, and turnover drive soil organic carbon accumulation at higher plant diversity
10.1111/gcb.14777 · 2020 · External reference
Agroforestry as policy option for forest-zone oil palm production in Indonesia
2020 · External reference
Increasing plant species diversity enhances microbial necromass carbon content but does not alter its contribution to soil organic carbon pool in a subtropical forest
10.1016/j.soilbio.2023.109183 · 2023 · External reference
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
10.1093/nar/gks1219 · 2012 · External reference
Unresolved reference
External reference
Native AMF colonization and microbial enzyme-mediated phosphorus mineralization are decoupled in organically fertilized jambu (Acmella oleracea (L.) R. K. Jansen)
10.1016/j.apsoil.2026.106903 · 2026 · External reference
Exploiting rRNA operon copy number to investigate bacterial reproductive strategies
10.1038/nmicrobiol.2016.160 · 2016 · External reference
Unresolved reference
External reference
Unresolved reference
2018 · External reference
10.1007/978-3-031-19949-3_4
10.1007/978-3-031-19949-3_4 · External reference
Unresolved reference
External reference
Linear mixed models and geostatistics for designed experiments in soil science: two entirely different methods or two sides of the same coin?
10.1111/ejss.12976 · 2021 · External reference
Pathways of mineral‐associated soil organic matter formation: integrating the role of plant carbon source, chemistry, and point of entry
10.1111/gcb.14482 · 2019 · External reference
10.2136/sssabookser5.2.c37
10.2136/sssabookser5.2.c37 · External reference
Unresolved reference
External reference
10.1038/s41558-023-01810-5
10.1038/s41558-023-01810-5 · External reference
Microbial necromass as the source of soil organic carbon in global ecosystems
10.1016/j.soilbio.2021.108422 · 2021 · External reference
Soil organic matter priming: the pH effects
10.1111/gcb.17349 · 2024 · External reference
Microbial trait multifunctionality drives soil organic matter formation potential
10.1038/s41467-024-53947-2 · 2024 · External reference
Welcome to the Tidyverse
10.21105/joss.01686 · 2019 · External reference
Unresolved reference
External reference
Ecological insights into soil health according to the genomic traits and environment-wide associations of bacteria in agricultural soils
2023 · External reference
Plant diversity is key for microbial necromass carbon accrual in alpine grasslands
10.1038/s43247-026-03447-6 · 2026 · External reference
Isotopic labeling evidence shows faster carbon release from microbial residues than plant litter
10.1088/1748-9326/ad786a · 2024 · External reference
Simultaneous inference in general parametric models
10.1002/bimj.200810425 · ExternalCitation · doi-reference
The automated determination of glucosamine, galactosamine, muramic acid, and mannosamine in soil and root hydrolysates by HPLC
10.1002/jpln.200321302 · ExternalCitation · doi-reference
10.1007/978-3-031-19949-3_4
10.1007/978-3-031-19949-3_4 · ExternalCitation · doi-reference
Optimisation of amino sugar quantification by HPLC in soil and plant hydrolysates
10.1007/s00374-011-0545-5 · ExternalCitation · doi-reference
Amino sugars as specific indices for fungal and bacterial residues in soil
10.1007/s00374-018-1288-3 · ExternalCitation · doi-reference
Short-term changes in the soil carbon stocks of young oil palm-based agroforestry systems in the eastern Amazon
10.1007/s10457-014-9689-2 · ExternalCitation · doi-reference
10.1007/s10457-023-00832-4
10.1007/s10457-023-00832-4 · ExternalCitation · doi-reference
Oil palm agroforestry systems store more carbon and nitrogen in soil aggregates than monoculture in the Amazon
10.1007/s11027-024-10166-w · ExternalCitation · doi-reference
Management practices affect soil carbon and physical quality in oil palm agroforestry systems in the amazon
10.1007/s42729-022-00947-0 · ExternalCitation · doi-reference
Leaf litter species affects decomposition rate and nutrient release in a cocoa plantation
10.1016/j.agee.2021.107705 · ExternalCitation · doi-reference
Plant species richness and legume presence increase microbial necromass carbon accumulation
10.1016/j.agee.2024.109196 · ExternalCitation · doi-reference
Native AMF colonization and microbial enzyme-mediated phosphorus mineralization are decoupled in organically fertilized jambu (Acmella oleracea (L.) R. K. Jansen)
10.1016/j.apsoil.2026.106903 · ExternalCitation · doi-reference
Palm oil expansion in Malaysia and its countermeasures through policy window and biorefinery approach
10.1016/j.envsci.2024.103671 · ExternalCitation · doi-reference
Carbon sequestration of forest soils is reflected by changes in physicochemical soil indicators ─ a comprehensive discussion of a long-term experiment on a detritus manipulation
10.1016/j.geoderma.2020.114918 · ExternalCitation · doi-reference
Microbial habitat specificity largely affects microbial co-occurrence patterns and functional profiles in wetland soils
10.1016/j.geoderma.2022.115866 · ExternalCitation · doi-reference
10.1016/j.geodrs.2024.e00806
10.1016/j.geodrs.2024.e00806 · ExternalCitation · doi-reference
10.1016/j.rhisph.2023.100736
10.1016/j.rhisph.2023.100736 · ExternalCitation · doi-reference
Microbial hotspots and hot moments in soil: concept & review
10.1016/j.soilbio.2015.01.025 · ExternalCitation · doi-reference
Soil microbial communities with greater investment in resource acquisition have lower growth yield
10.1016/j.soilbio.2019.01.025 · ExternalCitation · doi-reference
Sticky dead microbes: rapid abiotic retention of microbial necromass in soil
10.1016/j.soilbio.2020.107929 · ExternalCitation · doi-reference
Microbial necromass as the source of soil organic carbon in global ecosystems
10.1016/j.soilbio.2021.108422 · ExternalCitation · doi-reference
Tree roots exert greater influence on soil microbial necromass carbon than above-ground litter in subtropical natural and plantation forests
10.1016/j.soilbio.2022.108811 · ExternalCitation · doi-reference
Increasing plant species diversity enhances microbial necromass carbon content but does not alter its contribution to soil organic carbon pool in a subtropical forest
10.1016/j.soilbio.2023.109183 · ExternalCitation · doi-reference
Stabilized microbial necromass in soil is more strongly coupled with microbial diversity than the bioavailability of plant inputs
10.1016/j.soilbio.2024.109323 · ExternalCitation · doi-reference
Implications of smallholder livelihoods for scaling oil palm agroforestry in Brazilian Eastern Amazon
10.1016/j.wds.2024.100128 · ExternalCitation · doi-reference
Plant diversity increases soil microbial activity and soil carbon storage
10.1038/ncomms7707 · ExternalCitation · doi-reference
DADA2: high-resolution sample inference from Illumina amplicon data
10.1038/nmeth.3869 · ExternalCitation · doi-reference
Exploiting rRNA operon copy number to investigate bacterial reproductive strategies
10.1038/nmicrobiol.2016.160 · ExternalCitation · doi-reference
Land use driven change in soil pH affects microbial carbon cycling processes
10.1038/s41467-018-05980-1 · ExternalCitation · doi-reference
Unlocking complex soil systems as carbon sinks: multi-pool management as the key
10.1038/s41467-023-38700-5 · ExternalCitation · doi-reference
A global meta-analysis of soil organic carbon in the Anthropocene
10.1038/s41467-023-39338-z · ExternalCitation · doi-reference
Plant diversity drives positive microbial associations in the rhizosphere enhancing carbon use efficiency in agricultural soils
10.1038/s41467-024-52449-5 · ExternalCitation · doi-reference
Microbial trait multifunctionality drives soil organic matter formation potential
10.1038/s41467-024-53947-2 · ExternalCitation · doi-reference
Un(der)explored links between plant diversity and particulate and mineral-associated organic matter in soil
10.1038/s41467-025-60712-6 · ExternalCitation · doi-reference
10.1038/s41558-023-01810-5
10.1038/s41558-023-01810-5 · ExternalCitation · doi-reference
Soil carbon storage informed by particulate and mineral-associated organic matter
10.1038/s41561-019-0484-6 · ExternalCitation · doi-reference
Life history strategies of soil bacterial communities across global terrestrial biomes
10.1038/s41564-023-01465-0 · ExternalCitation · doi-reference
Deep learning for predicting 16S rRNA gene copy number
10.1038/s41598-024-64658-5 · ExternalCitation · doi-reference
Environmental and microbial controls on microbial necromass recycling, an important precursor for soil carbon stabilization
10.1038/s43247-020-00031-4 · ExternalCitation · doi-reference
Plant diversity is key for microbial necromass carbon accrual in alpine grasslands
10.1038/s43247-026-03447-6 · ExternalCitation · doi-reference
10.1080/01904167.2022.2058541
10.1080/01904167.2022.2058541 · ExternalCitation · doi-reference
Oil palm land conversion in Pará, Brazil, from 2006–2014: evaluating the 2010 Brazilian sustainable palm oil production program
10.1088/1748-9326/aaa270 · ExternalCitation · doi-reference
Isotopic labeling evidence shows faster carbon release from microbial residues than plant litter
10.1088/1748-9326/ad786a · ExternalCitation · doi-reference
microeco: an R package for data mining in microbial community ecology
10.1093/femsec/fiaa255 · ExternalCitation · doi-reference
Soil properties in agricultural systems affect microbial genomic traits
10.1093/femsmc/xtaf008 · ExternalCitation · doi-reference
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
10.1093/nar/gks1219 · ExternalCitation · doi-reference
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
10.1093/nar/gky1022 · ExternalCitation · doi-reference
10.1101/2024.09.08.611926
10.1101/2024.09.08.611926 · ExternalCitation · doi-reference
Deconstructing the microbial necromass continuum to inform soil carbon sequestration
10.1111/1365-2435.14014 · ExternalCitation · doi-reference
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
10.1111/1574-6976.12028 · ExternalCitation · doi-reference
piecewiseSEM: piecewise structural equationmodelling in R for ecology, evolution, and systematics
10.1111/2041-210x.12512 · ExternalCitation · doi-reference
Linear mixed models and geostatistics for designed experiments in soil science: two entirely different methods or two sides of the same coin?
10.1111/ejss.12976 · ExternalCitation · doi-reference
The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?
10.1111/gcb.12113 · ExternalCitation · doi-reference
Pathways of mineral‐associated soil organic matter formation: integrating the role of plant carbon source, chemistry, and point of entry
10.1111/gcb.14482 · ExternalCitation · doi-reference
Increased microbial growth, biomass, and turnover drive soil organic carbon accumulation at higher plant diversity
10.1111/gcb.14777 · ExternalCitation · doi-reference
Quantitative assessment of microbial necromass contribution to soil organic matter
10.1111/gcb.14781 · ExternalCitation · doi-reference
Conceptualizing soil organic matter into particulate and mineral‐associated forms to address global change in the 21st century
10.1111/gcb.14859 · ExternalCitation · doi-reference
Increased soil carbon storage through plant diversity strengthens with time and extends into the subsoil
10.1111/gcb.16641 · ExternalCitation · doi-reference
Microbial necromass under global change and implications for soil organic matter
10.1111/gcb.16676 · ExternalCitation · doi-reference
Soil organic matter priming: the pH effects
10.1111/gcb.17349 · ExternalCitation · doi-reference
Partial least squares regression as an alternative to current regression methods used in ecology
10.1111/j.1600-0706.2008.16881.x · ExternalCitation · doi-reference
10.1126/science.abo2380
10.1126/science.abo2380 · ExternalCitation · doi-reference
Agroforestry and the improvement of soil fertility: a view from amazonia
10.1155/2012/616383 · ExternalCitation · doi-reference
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
10.1371/journal.pone.0061217 · ExternalCitation · doi-reference
Cutadapt removes adapter sequences from high-throughput sequencing reads
10.14806/ej.17.1.200 · ExternalCitation · doi-reference
Characterization of açaí (E. oleracea) fruits and its processing residues
10.1590/s1516-89132010000600022 · ExternalCitation · doi-reference
Fitting linear mixed-effects models using lme4
10.18637/jss.v067.i01 · ExternalCitation · doi-reference
Welcome to the Tidyverse
10.21105/joss.01686 · ExternalCitation · doi-reference
10.2136/sssabookser5.2.c37
10.2136/sssabookser5.2.c37 · ExternalCitation · doi-reference
Particulate soil organic‐matter changes across a grassland cultivation sequence
10.2136/sssaj1992.03615995005600030017x · ExternalCitation · doi-reference
10.36783/18069657rbcs20220130
10.36783/18069657rbcs20220130 · ExternalCitation · doi-reference
