Research graph
References from Machine learning–driven prediction of Salmonella enterica virulence for enhanced risk assessment in poultry in Mexico. Local targets link to admitted publications; unresolved targets remain external evidence.
A genomic overview of the population structure of Salmonella
10.1371/journal.pgen.1007261 · 2018 · External reference
Improvement of quantitative microbiological risk assessment (QMRA) methodology through integration with gaenetic data
2023 · External reference
Unresolved reference
2021 · External reference
Identification of Salmonella enterica serovar Typhimurium genes important for survival in the swine gastric environment
10.1128/aem.72.4.2829-2836.2006 · 2006 · External reference
Genome-based machine learning for predicting antimicrobial resistance in Salmonella isolated from chicken
10.1016/j.lwt.2024.116122 · 2024 · External reference
Evolutionary trade-off between heat shock resistance, growth at high temperature, and virulence expression in Salmonella Typhimurium
10.1128/mbio.03105-23 · 2024 · External reference
Serovars, virulence factors, and antimicrobial resistance profile of non-typhoidal Salmonella in the human-dairy interface in Northwest Ethiopia: a one health approach
10.1371/journal.pntd.0012646 · 2024 · External reference
Random forests
10.1023/a:1010933404324 · 2001 · External reference
Salmonella genomics in public health and food safety
10.1128/ecosalplus.esp-0008-2020 · 2021 · External reference
PlasmidFinder and in silico pMLST: Identification and typing of plasmid replicons in whole-genome sequencing (WGS)
2019 · External reference
Unresolved reference
External reference
Unresolved reference
2016 · External reference
The use of classification trees for bioinformatics
2011 · External reference
Embracing diversity: differences in virulence mechanisms, disease severity, and host adaptations contribute to the success of Nontyphoidal Salmonella as a foodborne pathogen
10.3389/fmicb.2019.01368 · 2019 · External reference
Comparative genomics of Salmonella enterica serovars Paratyphi a, Typhi and typhimurium reveals distinct profiles of their pangenome, mobile genetic elements, antimicrobial resistance and defense systems repertoire
10.1080/21505594.2025.2504658 · 2025 · External reference
Unresolved reference
External reference
Support-vector networks
10.1023/a:1022627411411 · 1995 · External reference
Nearest neighbor pattern classification
10.1109/tit.1967.1053964 · 1967 · External reference
Assessing thermal inactivation of Salmonella on cooked broiler chicken carcasses in Trinidad and Tobago
10.2174/2210289201203020012 · 2012 · External reference
Unresolved reference
2002 · External reference
Microbial and chemical spoilage of chicken meat during storage at isothermal and fluctuation temperature under aerobic conditions
2016 · External reference
AMRFinderPlus and the reference gene catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
10.1038/s41598-021-91456-0 · 2021 · External reference
Salmonella enterica serovar Schwarzengrund: distribution, virulence, and antimicrobial resistance
10.3390/microorganisms13010092 · 2025 · External reference
Genetic relatedness and virulence potential of Salmonella Schwarzengrund strains with or without an IncFIB-IncFIC (FII) fusion plasmid isolated from food and clinical sources
10.3389/fmicb.2024.1397068 · 2024 · External reference
The sulfur assimilation pathway mitigates redox stress from acidic pH in Salmonella Typhi H58
10.1128/mbio.00467-25 · 2025 · External reference
Unresolved reference
1996 · External reference
Transfer of Salmonella enterica Serovar typhimurium from beef to tomato through kitchen equipment and the efficacy of intermediate decontamination procedures
10.4315/0362-028x.jfp-15-531 · 2016 · External reference
Detection, quantification, and characterization of Salmonella enterica in mango, tomato, and raw chicken purchased in the central region of Mexico
10.1111/1750-3841.16003 · 2022 · External reference
Genotypic and phenotypic quantitative microbial risk assessment model of human salmonellosis related to the consumption of chicken meat in the central region of Mexico
2022 · External reference
Food consumer behavior and Salmonella exposure self-perception in the central region of Mexico
10.1111/1750-3841.14792 · 2019 · External reference
Genomic diversity of Salmonella enterica isolated from raw chicken at retail establishments in Mexico
10.1016/j.ijfoodmicro.2023.110526 · 2024 · External reference
To the white-Kauffmann-Le minor scheme
10.1016/j.resmic.2009.10.002 · 2010 · External reference
Array programming with NumPy
10.1038/s41586-020-2649-2 · 2020 · External reference
Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198
10.1099/mgen.0.000269 · 2019 · External reference
Association of virulence and antibiotic resistance in Salmonella-statistical and computational insights into a selected set of clinical isolates
10.3390/microorganisms8101465 · 2020 · External reference
Global transcriptomic acid tolerance response in Salmonella Enteritidis
10.1016/j.lwt.2018.02.039 · 2018 · External reference
Evolution of Salmonella-host cell interactions through a dynamic bacterial genome
10.3389/fcimb.2017.00428 · 2017 · External reference
Risk assessment for salmonellosis in chicken in South Korea: the effect of Salmonella concentration in chicken at retail
10.5851/kosfa.2018.e37 · 2018 · External reference
Salmonellosis outcomes differ substantially by serotype
10.1086/588823 · 2008 · External reference
A pan-genome perspective on the evolutionary dynamics of polyphyly, virulence, and antibiotic resistance in Salmonella enterica serovar Mbandaka highlights emerging threats to public health and food safety posed by cloud gene families
10.1016/j.crfs.2024.100957 · 2025 · External reference
Machine learning to predict foodborne salmonellosis outbreaks based on genome characteristics and meteorological trends
10.1016/j.crfs.2023.100525 · 2023 · External reference
Comprehensive blueprint of Salmonella genomic plasticity identifies hotspots for pathogenicity genes
10.1371/journal.pbio.3002746 · 2024 · External reference
Phenotypic prediction: linking in vitro virulence to the genomics of 59 Salmonella enterica strains
10.3389/fmicb.2018.03182 · 2019 · External reference
The rise of non-typhoidal Salmonella: an emerging global public health concern
10.3389/fmicb.2025.1524287 · 2025 · External reference
Survival of foodborne pathogens on stainless steel surfaces and cross-contamination to foods
10.1016/s0168-1605(02)00540-8 · 2003 · External reference
A quantitative analysis of cross-contamination of Salmonella and Campylobacter spp. via domestic kitchen surfaces
10.4315/0362-028x-67.9.1892 · 2004 · External reference
A weighted composite dose-response model for human salmonellosis
10.1111/0272-4332.212112 · 2001 · External reference
A freshness indicator for monitoring chicken-breast spoilage using a Tyvek® sheet and RGB color analysis
10.1016/j.fpsl.2018.11.016 · 2019 · External reference
VFDB 2022: a general classification scheme for bacterial virulence factors
10.1093/nar/gkab1107 · 2022 · External reference
Machine learning reveals the dynamic importance of accessory sequences for Salmonella outbreak clustering
10.1128/mbio.02650-24 · 2025 · External reference
Unresolved reference
2016 · External reference
Microbiological safety of domestic refrigerators and the dishcloths used to clean them in Guadalajara, Jalisco, Mexico
10.4315/0362-028x.jfp-12-258 · 2013 · External reference
Scientific data and theories for salmonellosis dose–response assessment
10.1080/10807039.2017.1352443 · 2017 · External reference
A one health perspective on Salmonella enterica serovar Infantis, an emerging human multidrug-resistant pathogen
10.3201/eid3004.231031 · 2024 · External reference
Experimental human salmonellosis: I. Pathogenicity of strains of Salmonella meleagridis and Salmonella anatum obtained from spray-dried whole egg Author (s): Norman B. McCullough and C. Wesley Elsele Source
10.1093/infdis/88.3.278 · 1951 · External reference
Experimental human salmonellosis. II. Immunity studies following experimental illness with Salmonella meleagridis and Salmonella anatum
10.4049/jimmunol.66.5.595 · 1951 · External reference
Data structures for statistical computing in python
10.25080/majora-92bf1922-00a · 2010 · External reference
Prevention and control of human Salmonella enterica infections: an implication in food safety
2023 · External reference
Whole genome sequencing provides insights into the genetic determinants of invasiveness in Salmonella Dublin
10.1017/s0950268816000492 · 2016 · External reference
Using machine learning to predict antimicrobial MICs and associated genomic features for Nontyphoidal Salmonella
10.1128/jcm.01260-18 · 2019 · External reference
Machine learning methods as a tool for predicting risk of illness applying next-generation sequencing data
10.1111/risa.13239 · 2019 · External reference
Predictive models for growth of Salmonella typhimurium DT104 from low and high initial density on ground chicken with a natural microflora
10.1016/j.fm.2006.11.003 · 2007 · External reference
Risk of salmonellosis from chicken parts prepared from whole chickens sold in flow pack wrappers and subjected to temperature abuse
10.4315/0362-028x.jfp-17-097 · 2017 · External reference
Process risk model for Salmonella and ground chicken
10.1111/jam.14395 · 2019 · External reference
Increasing incidence of invasive nontyphoidal Salmonella infections in Queensland, Australia, 2007-2016
10.1371/journal.pntd.0007187 · 2019 · External reference
Distinct but intertwined evolutionary histories of multiple Salmonella enterica subspecies
10.1128/msystems.00515-19 · 2020 · External reference
Scikit-learn: machine learning in Python
2011 · External reference
Assessing Salmonella enterica biofilm formation in frequent scenarios of chicken handling in domestic kitchen environments
10.1016/j.fm.2025.104849 · 2025 · External reference
Assessing phenotypic virulence of Salmonella enterica across serovars and sources
10.3389/fmicb.2023.1184387 · 2023 · External reference
A genome-based model to predict the virulence of Pseudomonas aeruginosa isolates
10.1128/mbio.01527-20 · 2020 · External reference
Changing epidemiology of Salmonella Enteritidis human infections in the Netherlands and Belgium, 2006 to 2019: a registry-based population study
2022 · External reference
Probabilistic outputs for support vector machines and comparisons to regularized likelihood methods
1999 · External reference
A risk assessment of campylobacteriosis and salmonellosis linked to chicken meals prepared in households in Dakar, Senegal
10.1111/j.1539-6924.2012.01796.x · 2012 · External reference
Salmonella enterica serovar Panama, an understudied serovar responsible for extraintestinal salmonellosis worldwide
10.1128/iai.00273-19 · 2019 · External reference
Assessing the cross contamination and transfer rates of Salmonella enterica from chicken to lettuce under different food-handling scenarios
10.1016/j.fm.2010.04.011 · 2010 · External reference
Geography, antimicrobial resistance, and genomics of Salmonella enterica (serotypes Newport and Anatum) from meat in Mexico (2021−2023)
10.3390/microorganisms12122485 · 2024 · External reference
Development of a food spoilage indicator for monitoring freshness of skinless chicken breast
10.1016/j.talanta.2014.07.048 · 2014 · External reference
Salmonella Virchow infection of the chicken elicits cellular and humoral systemic and mucosal responses, but limited protection to homologous or heterologous re-challenge
10.3389/fvets.2014.00006 · 2014 · External reference
Developing a risk management framework to improve public health outcomes by enumerating and serotyping Salmonella in ground Turkey
2024 · External reference
Genomic characterization of multidrug-resistant Salmonella serovar Kentucky ST198 isolated in poultry flocks in Spain (2011–2017)
2022 · External reference
Transfer of Campylobacter and Salmonella from poultry meat onto poultry preparation surfaces
10.4315/0362-028x.jfp-16-414 · 2017 · External reference
Prokka: rapid prokaryotic genome annotation
10.1093/bioinformatics/btu153 · 2014 · External reference
Virulence and antimicrobial resistance profiles of Salmonella enterica serovars isolated from chicken at wet markets in Dhaka, Bangladesh
10.3390/microorganisms9050952 · 2021 · External reference
The cost of virulence: retarded growth of Salmonella Typhimurium cells expressing type III secretion system 1
10.1371/journal.ppat.1002143 · 2011 · External reference
The epidemiology of monophasic Salmonella typhimurium
10.1089/fpd.2019.2676 · 2020 · External reference
Machine learning-based predictive modeling to identify genotypic traits associated with Salmonella enterica disease endpoints in isolates from ground chicken
10.1016/j.lwt.2021.112701 · 2022 · External reference
Dose-response modeling of Salmonella using outbreak data
10.1016/j.ijfoodmicro.2010.09.026 · 2010 · External reference
Prevalence, virulence genes and antimicrobial resistance profiles of Salmonella serovars from retail beef in Selangor, Malaysia
10.3389/fmicb.2017.02697 · 2018 · External reference
Producing polished prokaryotic pangenomes with the Panaroo pipeline
10.1186/s13059-020-02090-4 · 2020 · External reference
Confirming the statistically significant superiority of tree-based machine learning algorithms over their counterparts for tabular data
10.1371/journal.pone.0301541 · 2024 · External reference
Quantification of Salmonella survival and infection in an in vitro model of the human intestinal tract as proxy for foodborne pathogens
10.3389/fmicb.2017.01139 · 2017 · External reference
Salmonella enteritidis activates inflammatory storm via SPI-1 and SPI-2 to promote intracellular proliferation and bacterial virulence
10.3389/fcimb.2023.1158888 · 2023 · External reference
Using bacterial pan-genome-based feature selection approach to improve the prediction of minimum inhibitory concentration (MIC)
10.3389/fgene.2023.1054032 · 2023 · External reference
Genomic characteristics and comparative genomics of Salmonella enterica subsp. enterica serovar Schwarzengrund strain S16 isolated from chicken feces
10.1186/s13099-021-00476-8 · 2022 · External reference
The Salmonella in silico typing resource (SISTR): an open web-accessible tool for rapidly typing and subtyping draft Salmonella genome assemblies
10.1371/journal.pone.0147101 · 2016 · External reference
Characterization of antibiotic resistance genes, plasmids, biofilm formation, and in vitro invasion capacity of Salmonella Enteritidis isolates from children with gastroenteritis
10.1089/mdr.2018.0421 · 2019 · External reference
A risk assessment of salmonellosis linked to chicken meals prepared in households of China
10.1016/j.foodcont.2017.04.003 · 2017 · External reference
