Research graph
References from Integrative omics reveals GCCGCC-mediated DREB regulation of serotonin biosynthesis in the southwestern China endemic walnut Juglans sigillata. Local targets link to admitted publications; unresolved targets remain external evidence.
Comprehensive Analysis of WUSCEL-Related Homeobox Gene Family in Ramie (Boehmeria nivea) Indicates Its Potential Role in Adventitious Root Development
10.3390/biology12121475 · 2023 · External reference
Serotonin and melatonin biosynthesis in plants: genome-wide identification of the genes and their expression reveal a conserved role in stress and development
10.3390/ijms222011034 · 2021 · External reference
Dietary neurotransmitters: a narrative review on current knowledge
10.3390/nu10050591 · 2018 · External reference
Precocious genotypes and homozygous tendency generated by self-pollination in walnut
10.1186/s12870-018-1549-1 · 2018 · External reference
Metabolite profiling and transcriptome analyses reveal novel regulatory mechanisms of melatonin biosynthesis in hickory
10.1038/s41438-021-00631-x · 2021 · External reference
Dendrobium officinale polysaccharide alleviates type 2 diabetes mellitus by restoring gut microbiota and repairing intestinal barrier via the LPS/TLR4/TRIF/NF-kB axis
10.1021/acs.jafc.3c02429 · 2023 · External reference
Untargeted and targeted metabolomics and tryptophan decarboxylase in vivo characterization provide novel insight on the development of kiwifruits (Actinidia deliciosa)
10.3390/ijms20040897 · 2019 · External reference
Indolamine accumulation and TDC/T5H expression profiles reveal the complex and dynamic regulation of serotonin biosynthesis in tomato (Solanum lycopersicum L.)
10.3389/fpls.2022.975434 · 2022 · External reference
Engineering hormonal crosstalk to enhance serotonin/melatonin levels in rice
10.1038/s41467-025-65067-6 · 2025 · External reference
Characterizing serotonin biosynthesis in Setaria viridis leaves and its effect on aphids
10.1007/s11103-021-01239-4 · 2022 · External reference
Population-genomic analyses reveal bottlenecks and asymmetric introgression from Persian into iron walnut during domestication
10.1186/s13059-022-02720-z · 2022 · External reference
OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression
10.1046/j.1365-313x.2003.01661.x · 2003 · External reference
Mind the gap: upgrading genomes with pacific biosciences RS long-read sequencing technology
10.1371/journal.pone.0047768 · 2012 · External reference
Views and perspectives on the indoleamines serotonin and melatonin in plants: past, present and future
10.1080/15592324.2024.2366545 · 2024 · External reference
Serotonin: an ancient molecule and an important regulator of plant processes
10.1016/j.biotechadv.2016.10.002 · 2016 · External reference
Foods for sleep improvement: a review of the potential and mechanisms involved
10.3390/foods14071080 · 2025 · External reference
Advances in AP2/ERF super-family transcription factors in plant
10.1080/07388551.2020.1768509 · 2020 · External reference
Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression
2000 · External reference
Sekiguchi Lesion gene encodes a cytochrome p450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice
10.1074/jbc.m109.091371 · 2010 · External reference
Enzyme promiscuity in serotonin biosynthesis, from bacteria to plants and humans
10.3389/fmicb.2022.873555 · 2022 · External reference
Rfam: annotating non-coding RNAs in complete genomes
10.1093/nar/gki081 · 2005 · External reference
Serotonin biosynthesis and its regulation in seeds of Juglans regia L
10.1016/s0044-328x(83)80104-4 · 1983 · External reference
Effects of walnuts (Juglans regia) on learning and memory functions
10.1007/s11130-011-0260-2 · 2011 · External reference
Transcriptome analysis of lipid biosynthesis during kernel development in two walnut (Juglans regia L.) varieties of “Xilin 3” and “Xiangling
10.1186/s12870-024-05546-y · 2024 · External reference
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
10.1186/1471-2105-12-491 · 2011 · External reference
Transcriptome analysis of walnut (Juglans regia L.) embryos reveals key developmental stages and genes involved in lipid biosynthesis and polyunsaturated fatty acid metabolism
10.1021/acs.jafc.0c05598 · 2021 · External reference
Structure and function of the brain serotonin system
10.1152/physrev.1992.72.1.165 · 1992 · External reference
Influence of tryptophan and serotonin on mood and cognition with a possible role of the gut-brain axis
10.3390/nu8010056 · 2016 · External reference
A genome variation map provides insights into the genetics of walnut adaptation and agronomic traits
10.1186/s13059-021-02517-6 · 2021 · External reference
Identification of key lipogenesis stages and proteins involved in walnut kernel development
10.1021/acs.jafc.2c08680 · 2023 · External reference
Enzymatic features of serotonin biosynthetic enzymes and serotonin biosynthesis in plants
10.4161/psb.3.6.5401 · 2008 · External reference
Senescence-induced serotonin biosynthesis and its role in delaying senescence in rice leaves
10.1104/pp.109.138552 · 2009 · External reference
Characterization of rice tryptophan decarboxylases and their direct involvement in serotonin biosynthesis in transgenic rice
10.1007/s00425-007-0614-z · 2007 · External reference
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
10.1093/nar/30.1.325 · 2002 · External reference
SOAP: short oligonucleotide alignment program
10.1093/bioinformatics/btn025 · 2008 · External reference
Comparative analysis of physicochemical properties, flavor compounds, and metabolites among three major cultivated walnut (Juglans sigillata Dode) varieties in China Yunnan
10.1016/j.lwt.2024.117003 · 2024 · External reference
The nutritional composition and health benefits of lincang walnuts
10.17140/aftnsoj-6-166 · 2020 · External reference
PgMYB2, a MeJA-Responsive transcription factor, positively regulates the dammarenediol synthase gene expression in Panax ginseng
10.3390/ijms20092219 · 2019 · External reference
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
10.1093/nar/25.5.955 · 1997 · External reference
Characteristics and quality of Juglans sigillata
2009 · External reference
TigrScan and GlimmerHMM:: two open source ab initio eukaryotic gene-finders
10.1093/bioinformatics/bth315 · 2004 · External reference
Serotonin: A frontline player in plant growth and stress responses
10.1111/ppl.13968 · 2023 · External reference
Call me serotonin
10.1038/s41557-024-01488-y · 2024 · External reference
Tryptophan is a precursor for melatonin and serotonin biosynthesis in in vitro regenerated St. John’s wort (Hypericum perforatum L. cv. Anthos) plants
10.1007/s002990000206 · 2000 · External reference
The case of tryptamine and serotonin in plants: a mysterious precursor for an illustrious metabolite
10.1093/jxb/erab220 · 2021 · External reference
Unresolved reference
2025 · External reference
Induction of serotonin biosynthesis is uncoupled from the coordinated induction of tryptophan biosynthesis in pepper fruits (Capsicum annuum) upon pathogen infection
10.1007/s00425-009-1015-2 · 2009 · External reference
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genornes
10.1093/bioinformatics/btm071 · 2007 · External reference
Improving plant transient expression through the rational design of synthetic 5′ and 3′ untranslated regions
10.1186/s13007-019-0494-9 · 2019 · External reference
Metabolomics reveals significant variations in metabolites and correlations regarding the maturation of walnuts (Juglans regia L
10.1242/bio.017863 · 2016 · External reference
Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product
10.1046/j.1365-313x.2000.00686.x · 2000 · External reference
DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression
10.1006/bbrc.2001.6299 · 2002 · External reference
Automated generation of heuristics for biological sequence comparison
10.1186/1471-2105-6-31 · 2005 · External reference
AUGUSTUS:: ab initio prediction of alternative transcripts
10.1093/nar/gkl200 · 2006 · External reference
Discovery and interaction of four key biosynthetic enzymes under co-regulation for dopamine biosynthesis with marine Meyerozyma guilliermondii GXDK6 and Bacillus aryabhattai NM1-A2
10.1016/j.ijbiomac.2025.142821 · 2025 · External reference
Role of serotonin in plant stress responses: Quo vadis?
10.1111/jipb.13882 · 2025 · External reference
OsbZIP18, a positive regulator of serotonin biosynthesis, negatively controls the UV-B tolerance in rice
10.3390/ijms23063215 · 2022 · External reference
Population genetic structure and adaptive differentiation of iron walnut Juglans regia subsp. sigillata in southwestern China
10.1002/ece3.5850 · 2019 · External reference
MEGA11 molecular evolutionary genetics analysis version 11
10.1093/molbev/msab120 · 2021 · External reference
Structural basis for divergent and convergent evolution of catalytic machineries in plant aromatic amino acid decarboxylase proteins
10.1073/pnas.1920097117 · 2020 · External reference
Investigation of a substrate-specifying residue within Papaver somniferum and Catharanthus roseus aromatic amino acid decarboxylases
10.1016/j.phytochem.2014.07.007 · 2014 · External reference
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
10.1038/nprot.2012.016 · 2012 · External reference
The genetic diversity and introgression of Juglans regia and Juglans sigillata in Tibet as revealed by SSR markers
10.1007/s11295-014-0804-3 · 2014 · External reference
AP2/ERF transcription factors and their functions in Arabidopsis responses to abiotic stresses
10.1016/j.envexpbot.2024.105763 · 2024 · External reference
The phytochemical profiles for walnuts (J. regia and J. sigillata) from China with protected geographical indications
10.1590/fst.30320 · 2021 · External reference
Sophisticated crosstalk of tryptophan-derived metabolites in plant stress responses
10.1016/j.xplc.2025.101425 · 2025 · External reference
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
10.1093/bioinformatics/btp033 · 2009 · External reference
A transcriptional regulator that boosts grain yields and shortens the growth duration of rice
10.1126/science.abi8455 · 2022 · External reference
Emerging roles for serotonin in regulating metabolism: new implications for an ancient molecule
10.1210/er.2018-00283 · 2019 · External reference
The tree peony DREB transcription factor PrDREB2D regulates seed α-linolenic acid accumulation
10.1093/plphys/kiae082 · 2024 · External reference
Perspective on the formation, analysis, and health effects of neuroactive compounds in foods
10.1021/acs.jafc.1c05181 · 2021 · External reference
Statistical analysis of real-time PCR data
10.1186/1471-2105-7-85 · 2006 · External reference