References

Genomic and functional techniques to mine the microbiome for novel antimicrobials and antimicrobial resistance genes

10.1111/nyas.13257 · 2017 · External reference

Soil microbes and their contribution to soil services

2013 · External reference

Permutational multivariate analysis of variance (PERMANOVA)

2014 · External reference

Bacteria spatial tracking in urban park soils with MALDI-TOF mass spectrometry and specific PCR

10.1186/s13040-022-00318-6 · 2023 · External reference

Gephi: an open source software for exploring and manipulating networks

10.1609/icwsm.v3i1.13937 · 2009 · External reference

Streptococcus pneumoniae proteomics: determinants of pathogenesis and vaccine development

10.1586/14789450.2015.1108844 · 2015 · External reference

Fast and sensitive protein alignment using DIAMOND

10.1038/nmeth.3176 · 2015 · External reference

Suppressive effects of gecko cathelicidin on biofilm formation and cariogenic virulence factors of Streptococcus mutans

10.1016/j.archoralbio.2021.105205 · 2021 · External reference

A high-quality genomic catalog of the human oral microbiome broadens its phylogeny and clinical insights

10.1016/j.chom.2025.10.001 · 2025 · External reference

MmpL transporter-mediated export of cell-wall associated lipids and siderophores in mycobacteria

10.1016/j.tube.2016.06.004 · 2016 · External reference

Risk factor analysis of children's exposure to microbial pathogens in playgrounds

10.1111/risa.13752 · 2022 · External reference

In vivo genetic analysis of bacterial virulence

10.1146/annurev.micro.53.1.129 · 1999 · External reference

Temporal changes in species, phylogenetic, and functional diversity of temperate tree communities: insights from assembly patterns

10.3389/fpls.2019.00294 · 2019 · External reference

MAGNETO: an automated workflow for genome-resolved metagenomics

10.1128/msystems.00432-22 · 2022 · External reference

Virulence factor involved in the secretion of type IV secreted substrates

10.1074/jbc.m116.730994 · 2016 · External reference

Comparison of factors limiting bacterial growth in different soils

10.1016/j.soilbio.2007.05.002 · 2007 · External reference

Metagenomic profiling of resistome and mobilome dynamics in diverse freshwater aquaculture modes

10.1016/j.watres.2026.126133 · 2026 · External reference

Elevated carbon dioxide accelerates the spatial turnover of soil microbial communities

10.1111/gcb.13098 · 2016 · External reference

Pathogenic strategies of enteric bacteria

10.1038/35021212 · 2000 · External reference

Taxator-tk: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods

10.1093/bioinformatics/btu745 · 2015 · External reference

Virulence and immunomodulatory roles of bacterial outer membrane vesicles

10.1128/mmbr.00031-09 · 2010 · External reference

A visual review of the human pathogen Streptococcus pneumoniae

10.1093/femsre/fux037 · 2017 · External reference

A history of one health

2014 · External reference

Reclaimed water as a reservoir of antibiotic resistance genes: distribution system and irrigation implications

10.3389/fmicb.2013.00130 · 2013 · External reference

Understanding the interaction between soil ORP and enzyme activity: how does wetland type affect constructed wetland performance for the advanced treatment of swine wastewater?

10.1016/j.cej.2024.156353 · 2024 · External reference

Diversity of potential antibiotic-resistant bacterial pathogens and the effect of suspended particles on the spread of antibiotic resistance in urban recreational water

10.1016/j.watres.2018.08.042 · 2018 · External reference

Tracking Vibrio cholerae cell-cell interactions during infection reveals bacterial population dynamics within intestinal microenvironments

10.1016/j.chom.2017.12.006 · 2018 · External reference

The effects of residential built environment on supporting physical activity diversity in high-density cities: a case study in Shenzhen, China

10.3390/ijerph18136676 · 2021 · External reference

Distribution of IS 91 family insertion sequences in bacterial genomes: evolutionary implications

10.1111/j.1574-6941.2002.tb01020.x · 2002 · External reference

The seasonal structure of microbial communities in the Western English Channel

10.1111/j.1462-2920.2009.02017.x · 2009 · External reference

Unresolved reference

2018 · External reference

Multicenter assessment of microbial community profiling using 16S rRNA gene sequencing and shotgun metagenomic sequencing

10.1016/j.jare.2020.07.010 · 2020 · External reference

Ticks and Borrelia in urban and peri-urban green space habitats in a city in southern England

10.1016/j.ttbdis.2016.12.009 · 2017 · External reference

Analyses of Brucella pathogenesis, host immunity, and vaccine targets using systems biology and bioinformatics

10.3389/fcimb.2012.00002 · 2012 · External reference

16S-ITGDB: an integrated database for improving species classification of prokaryotic 16S ribosomal RNA sequences

10.3389/fbinf.2022.905489 · 2022 · External reference

Gsds 2.0: an upgraded gene feature visualization server

10.1093/bioinformatics/btu817 · 2015 · External reference

Molecular analysis of bacteria in periodontitis: evaluation of clone libraries, novel phylotypes and putative pathogens

10.1099/mic.0.25791-0 · 2003 · External reference

The role of motility as a virulence factor in bacteria

10.1078/1438-4221-00173 · 2002 · External reference

Competition for manganese at the host-pathogen interface

10.1016/bs.pmbts.2016.05.002 · 2016 · External reference

The ShdA adhesin binds to the cationic cradle of the fibronectin 13FnIII repeat module: evidence for molecular mimicry of heparin binding

10.1111/j.1365-2958.2004.03995.x · 2004 · External reference

Community-acquired pneumonia and empyema caused by Pseudomonas stutzeri: a case report

10.24953/turkjpediatr.2004.2795 · 2004 · External reference

Target genes for virulence assessment of Escherichia coli isolates from water, food and the environment

10.1111/j.1574-6976.2000.tb00535.x · 2000 · External reference

Microbial virulence factors

10.3390/ijms21155320 · 2020 · External reference

Nutrient sulfur acquisition strategies employed by bacterial pathogens

10.1016/j.mib.2018.11.002 · 2019 · External reference

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

10.1093/bioinformatics/btv033 · 2015 · External reference

Characteristics of soil heavy metal pollution and health risk assessment in urban parks at a megacity of central China

10.3390/toxics11030257 · 2023 · External reference

[Distribution Characteristics and Risk Assessment of Microplastics in Water of Different Functional Parks in Guilin]

2023 · External reference

Quality or quantity of urban greenery: which matters more to mental health? Evidence from housing prices in the Pearl River Delta

10.1016/j.landurbplan.2025.105438 · 2025 · External reference

Acute mental health benefits of urban nature

10.1038/s44284-025-00286-y · 2025 · External reference

Fates of intracellular and extracellular antibiotic resistance genes during the cattle farm wastewater treatment process

10.1016/j.biortech.2021.126272 · 2022 · External reference

Toxin-Antitoxin gene pairs found in Tn3 family transposons appear to be an integral part of the transposition module

10.1128/mbio.00452-20 · 2020 · External reference

Pneumonia due to Pandoraea Apista after evacuation of traumatic intracranial hematomas:a case report and literature review

10.1186/s12879-019-4420-6 · 2019 · External reference

Green and blue space availability and self-rated health among seniors in China: evidence from a National survey

10.3390/ijerph18020545 · 2021 · External reference

Vfdb 2019: a comparative pathogenomic platform with an interactive web interface

10.1093/nar/gky1080 · 2019 · External reference

The dual roles of activating transcription factor 3 (ATF3) in inflammation, apoptosis, ferroptosis, and pathogen infection responses

10.3390/ijms25020824 · 2024 · External reference

Unresolved reference

2015 · External reference

Distribution, sources and health risk assessment of contaminations in water of urban park: a case study in Northeast China

10.1007/s10653-019-00293-8 · 2019 · External reference

Comparison of the pathogenic potentials of environmental and clinical Vibrio parahaemolyticus strains indicates a role for temperature regulation in virulence

10.1128/aem.01450-10 · 2010 · External reference

Pseudomonas stutzeri associated conjunctivitis

2008 · External reference

Cutadapt removes adapter sequences from high-throughput sequencing reads

10.14806/ej.17.1.200 · 2011 · External reference

Molecular characteristics of an adhesion molecule containing cholesterol‐dependent cytolysin‐motif produced by mitis group streptococci

10.1111/1348-0421.12868 · 2021 · External reference

The distribution of plasmids that carry virulence and resistance genes in Staphylococcus aureus is lineage associated

10.1186/1471-2180-12-104 · 2012 · External reference

High frequency of horizontal gene transfer in the Oceans

2010 · External reference

10.1016/b978-0-444-63503-7.00011-5

10.1016/b978-0-444-63503-7.00011-5 · 2019 · External reference

Shotgun metagenomic sequencing reveals freshwater beach sands as reservoir of bacterial pathogens

10.1016/j.watres.2017.02.057 · 2017 · External reference

Functional group diversity increases with modularity in complex food webs

10.1038/ncomms8379 · 2015 · External reference

ClbM is a versatile, cation-promiscuous MATE transporter found in the colibactin biosynthetic gene cluster

10.1016/j.bbrc.2016.12.018 · 2017 · External reference

Intra-species variation within Lactobacillus rhamnosus correlates to beneficial or harmful outcomes: lessons from the oral cavity

10.1186/s12864-020-07062-3 · 2020 · External reference

Effects of heavy metal and disinfectant on antibiotic resistance genes and virulence factor genes in the plastisphere from diverse soil ecosystems

10.1016/j.jhazmat.2023.133335 · 2024 · External reference

Residential exposure to visible blue space (but not green space) associated with lower psychological distress in a capital city

10.1016/j.healthplace.2016.03.002 · 2016 · External reference

Microbial life at high salt concentrations: phylogenetic and metabolic diversity

10.1186/1746-1448-4-2 · 2008 · External reference

Unresolved reference

2016 · External reference

Microbial community resilience across ecosystems and multiple disturbances

10.1128/mmbr.00026-20 · 2021 · External reference

Antimicrobial resistance: a global multifaceted phenomenon

10.1179/2047773215y.0000000030 · 2015 · External reference

Health impacts of environmental mycobacteria

10.1128/cmr.17.1.98-106.2004 · 2004 · External reference

Green spaces and preventable disease and economic burdens in China from 2000 to 2020: a health impact assessment study

10.1016/j.landurbplan.2025.105393 · 2025 · External reference

Comparative genome analyses of five Vibrio penaeicida strains provide insights into their virulence-related factors

2022 · External reference

Identification and pathogenicity of bacteria associated with etiolation and decline of creeping bentgrass golf course putting greens

10.1094/phyto-01-17-0015-r · 2018 · External reference

MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes

10.1186/s12859-020-03940-5 · 2021 · External reference

A review on host-pathogen interactions: classification and prediction

10.1007/s10096-016-2716-7 · 2016 · External reference

Identification and characterization of Clostridium sordellii toxin gene regulator

10.1128/jb.00711-13 · 2013 · External reference

Overview of methodologies for the culturing, recovery and detection of Campylobacter

10.1080/09603123.2022.2029366 · 2023 · External reference

From food to cell: nutrient exploitation strategies of enteropathogens

10.1099/mic.0.078105-0 · 2014 · External reference

Pseudomonas fluorescens filamentous hemagglutinin, an iron-regulated protein, is an important virulence factor that modulates bacterial pathogenicity

10.3389/fmicb.2016.01320 · 2016 · External reference

The siderophore pyoverdine of Pseudomonas syringae pv. tabaci 6605 is an intrinsic virulence factor in host tobacco infection

10.1128/jb.00689-09 · 2010 · External reference

Identification of a Latin american-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

10.1186/s12862-016-0619-y · 2016 · External reference

Cell aggregation: a mechanism of pathogenic Leptospira to survive in fresh water

2004 · External reference

HPB-Chip: an accurate high-throughput qPCR-based tool for rapidly profiling waterborne human pathogenic bacteria in the environment

10.1016/j.watres.2024.121927 · 2024 · External reference

A perspective on gut health

10.4103/ghep.ghep_38_22 · 2023 · External reference

Revisiting the taxonomy and evolution of pathogenicity of the genus Leptospira through the prism of genomics

10.1371/journal.pntd.0007270 · 2019 · External reference

Impacts of urban blue-green space on residents' health: a bibliometric review

10.3390/ijerph192316192 · 2022 · External reference

Selective enrichment of virulence factor genes in the plastisphere under antibiotic and heavy metal pressures

10.1016/j.jhazmat.2023.133319 · 2024 · External reference

Genetic- and fiber-diet-mediated changes in virulence factors in pig colon contents and feces and their driving factors

2024 · External reference

Metagenomics reveals the potential transmission risk of resistomes from urban park environment to human

10.1016/j.jhazmat.2024.135387 · 2024 · External reference

Metagenomics: facts and artifacts, and computational challenges

10.1007/s11390-010-9306-4 · 2010 · External reference

Water volume influences antibiotic resistomes and microbiomes during fish corpse decomposition

10.1016/j.scitotenv.2021.147977 · 2021 · External reference

Processes controlling the transmission of bacterial pathogens in the environment

10.1016/j.resmic.2006.12.005 · 2007 · External reference

A new pathogenic mutation of the BRCA1 gene in a patient with ovarian cancer: a case report

2018 · External reference

Abundance and characteristics of microplastics in the surface water and sediment of parks in Xi'an city, Northwest China

2022 · External reference

Mobilizable plasmids drive the spread of antimicrobial resistance genes and virulence genes in Klebsiella pneumoniae

10.1186/s13073-023-01260-w · 2023 · External reference

Combined treatment of salinity stress and fruit thinning effect on tomato

2022 · External reference

Deciphering the mobility and bacterial hosts of antibiotic resistance genes under antibiotic selection pressure by metagenomic assembly and binning approaches

10.1016/j.watres.2020.116318 · 2020 · External reference

Stochastic community assembly: does it matter in microbial ecology?

10.1128/mmbr.00002-17 · 2017 · External reference

Salmonella enteritidis RfbD enhances bacterial colonization and virulence through inhibiting autophagy

10.1016/j.micres.2023.127338 · 2023 · External reference

Proteus mirabilis fimbriae (PMF) are important for both bladder and kidney colonization in mice

10.1099/mic.0.26534-0 · 2003 · External reference