References

Root architecture and the rhizosphere microbiome: shaping sustainable agriculture

10.1016/j.plantsci.2025.112599 · 2025 · External reference

Using network analysis to explore co-occurrence patterns in soil microbial communities

10.1038/ismej.2011.119 · 2012 · External reference

Advances in plant growth-promoting bacterial inoculant technology: formulations and practical perspectives (1998-2013)

10.1007/s11104-013-1956-x · 2014 · External reference

Controlling the false discovery rate: a practical and powerful approach to multiple testing

10.1111/j.2517-6161.1995.tb02031.x · 1995 · External reference

Root exudates protect rhizosphere Pseudomonas from water stress

10.1128/aem.00768-25 · 2025 · External reference

GmAMT2.1/2.2-dependent ammonium nitrogen and metabolites shape rhizosphere microbiome assembly to mitigate cadmium toxicity

10.1038/s41522-024-00532-6 · 2024 · External reference

Stimulated saprotrophic fungi in arable soil extend their activity to the rhizosphere and root microbiomes of crop seedlings

10.1111/1462-2920.15563 · 2021 · External reference

Soil microbiota as game-changers in restoration of degraded lands

10.1126/science.abe0725 · 2022 · External reference

The ecology of the microbiome: networks, competition, and stability

10.1126/science.aad2602 · 2015 · External reference

Association of biochar properties with changes in soil bacterial, fungal and fauna communities and nutrient cycling processes

10.1007/s42773-021-00099-x · 2021 · External reference

Molecular ecological network analyses

10.1186/1471-2105-13-113 · 2012 · External reference

Effects of biochar on soil microbial communities: a meta-analysis

10.1016/j.scitotenv.2023.166079 · 2023 · External reference

UPARSE: highly accurate OTU sequences from microbial amplicon reads

10.1038/nmeth.2604 · 2013 · External reference

Roles of arbuscular Mycorrhizal Fungi on soil fertility: contribution in the improvement of physical, chemical, and biological properties of the soil

10.3389/ffunb.2022.723892 · 2022 · External reference

Microbial interactions: from networks to models

10.1038/nrmicro2832 · 2012 · External reference

Embracing the unknown: disentangling the complexities of the soil microbiome

10.1038/nrmicro.2017.87 · 2017 · External reference

Defined synthetic microbial communities colonize and benefit field-grown sorghum

10.1093/ismejo/wrae126 · 2024 · External reference

Biochar additions alter phosphorus and nitrogen availability in agricultural ecosystems: a meta-analysis

10.1016/j.scitotenv.2018.11.124 · 2019 · External reference

Microbiome datasets are compositional: and this is not optional

10.3389/fmicb.2017.02224 · 2017 · External reference

Unresolved reference

1986 · External reference

Soil microbial communities and restoration ecology: facilitators or followers?

10.1126/science.1172975 · 2009 · External reference

Environmental stress destabilizes microbial networks

10.1038/s41396-020-00882-x · 2021 · External reference

Variation in carbon, nitrogen and phosphorus partitioning between above- and belowground biomass along a precipitation gradient at Tibetan Plateau

10.1007/s11629-014-3117-y · 2016 · External reference

Linking bacterial life strategies with soil organic matter accrual by karst vegetation restoration

10.1016/j.soilbio.2022.108925 · 2023 · External reference

A simplified synthetic rhizosphere bacterial community steers plant oxylipin pathways for preventing foliar phytopathogens

10.1016/j.plaphy.2023.107941 · 2023 · External reference

Biochar boosts tropical but not temperate crop yields

10.1088/1748-9326/aa67bd · 2017 · External reference

Microbial inoculants modify the functions of soil microbes to optimize plant growth at abandoned mine sites

10.1016/j.jes.2024.10.002 · 2025 · External reference

Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation

2023 · External reference

The concept and future prospects of soil health

10.1038/s43017-020-0080-8 · 2020 · External reference

Biochar effects on soil biota - a review

10.1016/j.soilbio.2011.04.022 · 2011 · External reference

Machine learning models reveal how biochar amendment affects soil microbial communities

10.1007/s42773-023-00291-1 · 2023 · External reference

Meta-analysis reveals the effects of microbial inoculants on the biomass and diversity of soil microbial communities

10.1038/s41559-024-02437-1 · 2024 · External reference

Destabilized microbial networks with distinct performances of abundant and rare biospheres in maintaining networks under increasing salinity stress

10.1002/imt2.79 · 2023 · External reference

Plant and native microorganisms amplify the positive effects of microbial inoculant

10.3390/microorganisms11030570 · 2023 · External reference

Mineral-solubilizing microbial inoculant positively affects the multifunctionality of anthropogenic soils in abandoned mining areas

10.1016/j.jenvman.2023.118553 · 2023 · External reference

Microbial inoculants drive changes in soil and plant microbiomes and improve plant functions in abandoned mine restoration

10.1111/pce.15215 · 2025 · External reference

Biochar reshapes soil bacterial community composition and survival strategies: a meta-analysis revealing trade-offs between microbial stability and functional complexity

10.1007/s00374-025-01971-9 · 2026 · External reference

Interactions between biochar and nitrogen impact soil carbon mineralization and the microbial community

10.1016/j.still.2019.104437 · 2020 · External reference

A guide for comparing microbial co-occurrence networks

10.1002/imt2.71 · 2023 · External reference

Bridging ecological assembly process and community stability upon bacterial invasions

10.1093/ismejo/wrae066 · 2024 · External reference

The legacy of microbial inoculants in agroecosystems and potential for tackling climate change challenges

2022 · External reference

Unresolved reference

2000 · External reference

Plant-growth-promoting rhizobacteria

10.1146/annurev.micro.62.081307.162918 · 2009 · External reference

Deliberate introduction of invisible invaders: a critical appraisal of the impact of microbial inoculants on soil microbial communities

10.1016/j.soilbio.2020.107874 · 2020 · External reference

Patterns and processes of microbial community assembly

10.1128/mmbr.00051-12 · 2013 · External reference

Microbial inoculants using spent mushroom substrates as carriers improve soil multifunctionality and plant growth by changing soil microbial community structure

10.1016/j.jenvman.2024.122726 · 2024 · External reference

Microbial inoculant-induced modifications of rhizospheric metabolites and microbial communities enhance plant growth

2024 · External reference

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

10.1038/s41467-020-18560-z · 2020 · External reference

Phosphate-Solubilizing Pseudomonas sp. strain WS32 rhizosphere colonization-induced expression changes in wheat roots

10.3389/fmicb.2022.927889 · 2022 · External reference

Soil phosphorus transformation and plant uptake driven by phosphate-solubilizing microorganisms

10.3389/fmicb.2024.1383813 · 2024 · External reference

Going back to the roots: the microbial ecology of the rhizosphere

10.1038/nrmicro3109 · 2013 · External reference

Life history strategies of soil bacterial communities across global terrestrial biomes

10.1038/s41564-023-01465-0 · 2023 · External reference

Bacillus drives functional states in synthetic plant root bacterial communities

10.1186/s13059-025-03739-8 · 2025 · External reference

Biochar applications influence soil physical and chemical properties, microbial diversity, and crop productivity: a meta-analysis

10.1007/s42773-022-00138-1 · 2022 · External reference

Methods of soil analysis: part 3. Chemical methods

1996 · External reference

Quantifying community assembly processes and identifying features that impose them

10.1038/ismej.2013.93 · 2013 · External reference

A review of root exudates and rhizosphere microbiome for crop production

10.1007/s11356-021-15838-7 · 2021 · External reference

Soil bacterial and fungal communities show distinct recovery patterns during forest ecosystem restoration

10.1128/aem.00966-17 · 2017 · External reference

Bacillus velezensis stimulates resident rhizosphere Pseudomonas stutzeri for plant health through metabolic interactions

10.1038/s41396-021-01125-3 · 2022 · External reference

Soil enzymes

1994 · External reference

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

10.1038/s41396-018-0082-4 · 2018 · External reference

Plant-microbiome interactions: from community assembly to plant health

10.1038/s41579-020-0412-1 · 2020 · External reference

Plant-soil feedbacks: the past, the present and future challenges

10.1111/1365-2745.12054 · 2013 · External reference

Conceptual synthesis in community ecology

10.1086/652373 · 2010 · External reference

Plant growth promoting rhizobacteria as biofertilizers

10.1023/a:1026037216893 · 2003 · External reference

Functional assembly of root-associated microbial consortia improves nutrient efficiency and yield in soybean

10.1111/jipb.13073 · 2021 · External reference

Mycorrhizal responses to biochar in soil - concepts and mechanisms

10.1007/s11104-007-9391-5 · 2007 · External reference

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

10.1038/ismej.2015.235 · 2016 · External reference

Flavones enrich rhizosphere Pseudomonas to enhance nitrogen utilization and secondary root growth in Populus

10.1038/s41467-025-56226-w · 2025 · External reference

Soil inoculation steers restoration of terrestrial ecosystems

10.1038/nplants.2016.107 · 2016 · External reference

Diversity-triggered deterministic bacterial assembly constrains community functions

10.1038/s41467-019-11787-5 · 2019 · External reference

Deciphering factors driving soil microbial life-history strategies in restored grasslands

10.1002/imt2.66 · 2023 · External reference

Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation

10.1038/s41477-021-00897-y · 2021 · External reference

The addition of biochar and nitrogen alters the microbial community and their cooccurrence network by affecting soil properties

10.1016/j.chemosphere.2022.137101 · 2023 · External reference

Host genotype-specific rhizosphere fungus enhances drought resistance in wheat

10.1186/s40168-024-01770-8 · 2024 · External reference

Arbuscular mycorrhizal fungi conducting the hyphosphere bacterial orchestra

10.1016/j.tplants.2021.10.008 · 2022 · External reference

Stochastic community assembly: does it matter in microbial ecology?

10.1128/mmbr.00002-17 · 2017 · External reference