Research graph
References from BioGAIP: a scalable and robust LLM-powered multi-agent system for automated bioinformatics tasks. Local targets link to admitted publications; unresolved targets remain external evidence.
Prompt-based bioinformatics: a new interface for multi-omics analysis
10.1038/s41576-025-00889-0 · 2025 · External reference
Computational solutions for omics data
10.1038/nrg3433 · 2013 · External reference
SciToolAgent: a knowledge-graph-driven scientific agent for multitool integration
10.1038/s43588-025-00849-y · 2025 · External reference
STAR: ultrafast universal RNA-seq aligner
10.1093/bioinformatics/bts635 · 2013 · External reference
The hidden risks of LLM-generated web application code: a security-centric evaluation of code generation capabilities in large language models
2025 · External reference
The nf-core framework for community-curated bioinformatics pipelines
10.1038/s41587-020-0439-x · 2020 · External reference
Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
10.1186/s13059-019-1842-9 · 2019 · External reference
OMICtools: an informative directory for multi-omic data analysis
10.1093/database/bau069 · 2014 · External reference
Autonomous biomedical research with an artificial intelligence agent
10.1126/science.adz4351 · 2026 · External reference
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
10.1093/nar/gkaa434 · 2020 · External reference
The Sequence Read Archive: a decade more of explosive growth
10.1093/nar/gkab1053 · 2022 · External reference
FOXA2 promotes metastatic competence in small cell lung cancer
10.1038/s41467-025-60141-5 · 2025 · External reference
DrBioRight 2.0: an LLM-powered bioinformatics chatbot for large-scale cancer functional proteomics analysis
10.1038/s41467-025-57430-4 · 2025 · External reference
Unresolved reference
External reference
The 2024 nucleic acids research database issue and the online molecular biology database collection
10.1093/nar/gkad1173 · 2024 · External reference
AI-generated code is not reproducible (yet): an empirical study of dependency gaps in LLM-based coding agents
2025 · External reference
A transcriptome-based human universal senescence index (hUSI) robustly predicts cellular senescence under various conditions
10.1038/s43587-025-00886-2 · 2025 · External reference
AutoGen: enabling next-gen LLM applications via multi-agent conversation
2023 · External reference
A comprehensive survey on integrating large language models with knowledge-based methods
10.1016/j.knosys.2025.113503 · 2025 · External reference
Pan-cancer transcriptome analysis reveals widespread regulation through alternative tandem transcription initiation
10.1126/sciadv.adl5606 · 2024 · External reference
