Research graph
References from RNAdex: graph-based 3D RNA Motif library incorporating non-Watson–Crick interactions. Local targets link to admitted publications; unresolved targets remain external evidence.
Advancement of the emerging field of rna nanotechnology
10.1021/acsnano.6b05737 · 2017 · External reference
mrna vaccines for cancer immunotherapy
10.3389/fimmu.2022.1029069 · 2022 · External reference
Rna-based therapeutics: an overview and prospectus
10.1038/s41419-022-05075-2 · 2022 · External reference
How rna folds
10.1006/jmbi.1999.3001 · 1999 · External reference
Analysis of rna motifs
10.1016/s0959-440x(03)00076-9 · 2003 · External reference
Principles for understanding the accuracy of shape-directed rna structure modeling
10.1021/bi300755u · 2013 · External reference
Contrafold: Rna secondary structure prediction without physics-based models
10.1093/bioinformatics/btl246 · 2006 · External reference
Machine learning for rna 2d structure prediction benchmarked on experimental data
10.1093/bib/bbad153 · 2023 · External reference
Recent trends in rna informatics: a review of machine learning and deep learning for rna secondary structure prediction and rna drug discovery
10.1093/bib/bbad186 · 2023 · External reference
Tertiary structure prediction of rna-rna complexes using a secondary structure and fragment-based method
10.1021/ci400525t · 2014 · External reference
trrosettarna: automated prediction of rna 3d structure with transformer network
10.1038/s41467-023-42528-4 · 2023 · External reference
Limits in accuracy and a strategy of rna structure prediction using experimental information
10.1093/nar/gkz427 · 2019 · External reference
Three-dimensional rna structure refinement by hydroxyl radical probing
10.1038/nmeth.1976 · 2012 · External reference
Biochemistry, Robust and generic rna modeling using inferred constraints: a structure for the hepatitis c virus ires pseudoknot domain
10.1021/bi100142y · 2010 · External reference
Predicting 3d rna structure from the nucleotide sequence using euclidean neural networks
10.1016/j.bpj.2023.10.011 · 2023 · External reference
3drna v2.0: an updated web server for rna 3d structure prediction
10.3390/ijms20174116 · 2019 · External reference
Fr3d: Finding local and composite recurrent structural motifs in rna 3d structures
10.1007/s00285-007-0110-x · 2008 · External reference
The protein data bank
10.1093/nar/28.1.235 · 2000 · External reference
Scor: a structural classification of rna database
2002 · External reference
Rnajunction: a database of rna junctions and kissing loops for three-dimensional structural analysis and nanodesign
10.1093/nar/gkm842 · 2008 · External reference
Automated classification of rna 3d motifs and the rna 3d motif atlas
10.1261/rna.039438.113 · 2013 · External reference
Rna bricks - a database of rna 3d motifs and their interactions
10.1093/nar/gkt1084 · 2014 · External reference
Rna cossmos: characterization of secondary structure motifs—a searchable database of secondary structure motifs in rna three-dimensional structures
10.1093/nar/gkr943 · 2012 · External reference
Rna cossmos 2.0: an improved searchable database of secondary structure motifs in rna three-dimensional structures
10.1093/database/baz153 · 2020 · External reference
Rna frabase 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within rna structures
10.1186/1471-2105-11-231 · 2010 · External reference
Ginclus: Rna structural motif clustering using graph isomorphism network
10.1093/nargab/lqaf050 · 2025 · External reference
Mining for recurrent long-range interactions in rna structures reveals embedded hierarchies in network families
10.1093/nar/gky197 · 2018 · External reference
Dual graph partitioning highlights a small group of pseudoknot-containing rna submotifs
10.3390/genes9080371 · 2018 · External reference
Graph-based sampling for approximating global helical topologies of rna
10.1073/pnas.1318893111 · 2014 · External reference
10.1101/2024.10.11.617338
10.1101/2024.10.11.617338 · External reference
10.1109/cis58238.2022.00032
10.1109/cis58238.2022.00032 · External reference
Pseudoknots: Rna structures with diverse functions
10.1371/journal.pbio.0030213 · 2005 · External reference
Recurrent structural rna motifs, isostericity matrices and sequence alignments
10.1093/nar/gki535 · 2005 · External reference
The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions
10.1006/jmbi.1997.1144 · 1997 · External reference
Structural basis of pyrimidine specificity in the MS2 RNA hairpin-coat-protein complex
2001 · External reference
Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes
10.1038/nbt.2880 · 2014 · External reference
Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch
10.1021/bi100671e · 2010 · External reference
Structural basis of ligand binding by a c-di-GMP riboswitch
10.1038/nsmb.1702 · 2009 · External reference
Rfam 14: expanded coverage of metagenomic, viral and microrna families
10.1093/nar/gkaa1047 · 2021 · External reference
10.1038/s41598-019-41695-z
10.1038/s41598-019-41695-z · External reference
From knotted to nested rna structures: a variety of computational methods for pseudoknot removal
10.1261/rna.881308 · 2008 · External reference
Weisfeiler-lehman graph kernels
2011 · External reference
Quantitative analysis of nucleic acid three-dimensional structures
10.1006/jmbi.2001.4626 · 2001 · External reference
