References

Response of alteromonadaceae and rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms

10.1111/j.1462-2920.2007.01360.x · 2007 · External reference

Binning metagenomic contigs by coverage and composition

10.1038/nmeth.3103 · 2014 · External reference

Unresolved reference

External reference

Glaciecola nitratireducens sp. Nov., isolated from seawater

10.1099/ijs.0.64330-0 · 2006 · External reference

Farming fish in the sea will not nourish the world

10.1038/s41467-020-19679-9 · 2020 · External reference

Trimmomatic: a flexible trimmer for illumina sequence data

10.1093/bioinformatics/btu170 · 2014 · External reference

Annual recurrence of prokaryotic climax communities in shallow waters of the North Mediterranean

10.1111/1462-2920.16595 · 2024 · External reference

A review on the fate, human health and environmental impacts, as well as regulation of antibiotics used in aquaculture

10.1016/j.envadv.2023.100411 · 2023 · External reference

Mycoplasmas and their host: emerging and re-emerging minimal pathogens

10.1016/j.tim.2013.01.003 · 2013 · External reference

A framework for estimating niche metrics using the resemblance between qualitative resources

10.1111/j.1600-0706.2011.19679.x · 2011 · External reference

Benchmarking DNA isolation methods for marine metagenomics

10.1038/s41598-023-48804-z · 2023 · External reference

Aquaculture can promote the presence and spread of antibiotic-resistant enterococci in marine sediments

10.1371/journal.pone.0062838 · 2013 · External reference

The marine environment as a reservoir of enterococci carrying resistance and virulence genes strongly associated with clinical strains

10.1111/1758-2229.12125 · 2014 · External reference

An additional use of tertiary clarifiers: potential for ecology-based control of bacterial and genetic pollution in wastewater

10.1038/s41545-026-00582-7 · 2026 · External reference

Antibiotic-resistant enterococci in seawater and sediments from a coastal fish farm

10.1089/mdr.2011.0204 · 2012 · External reference

Multilayered human activities shape the microbial communities of groundwater-dependent ecosystems on an arid Oceanic Island

10.1007/s00248-026-02797-0 · 2026 · External reference

Antibiotic resistance genes, virulence factors, and biofilm formation in coagulase-negative staphylococcus spp. isolates from European hakes (Merluccius merluccius, L.) caught in the Northeast Atlantic Ocean

10.3390/pathogens12121447 · 2023 · External reference

Species assemblages and indicator species:the need for a flexible asymmetrical approach

1997 · External reference

Unresolved reference

2024 · External reference

Unresolved reference

2025 · External reference

TYGS and LPSN in 2025: a global core biodata resource for genome-based classification and nomenclature of prokaryotes within DSMZ digital diversity

10.1093/nar/gkaf1110 · 2026 · External reference

List of recommended names for bacteria of medical importance: report of the Ad Hoc committee on mitigating changes in prokaryotic nomenclature

10.1099/ijsem.0.006943 · 2025 · External reference

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

10.1038/ismej.2011.41 · 2011 · External reference

Human health consequences of use of antimicrobial agents in aquaculture

10.1086/605667 · 2009 · External reference

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

10.7717/peerj.7359 · 2019 · External reference

Ascidiaceihabitans donghaensis gen. nov., sp. Nov., isolated from the golden sea squirt Halocynthia aurantium

10.1099/ijs.0.066399-0 · 2014 · External reference

Temporal variation in the prokaryotic community of a nearshore marine environment

10.1038/s41598-022-20954-6 · 2022 · External reference

Revisiting the genus photobacterium: taxonomy, ecology and pathogenesis

2017 · External reference

Virulence properties of three new photobacterium species affecting cultured fish

10.1111/jam.14437 · 2020 · External reference

Aquaculture bacterial pathogen database: pathogen monitoring and screening in coastal waters using environmental DNA

2023 · External reference

Unresolved reference

1997 · External reference

A mediterranean perspective on antimicrobial resistance in aquaculture

10.1016/j.aquaculture.2026.743773 · 2026 · External reference

Genomics of the pathogenic Clostridia

10.1128/microbiolspec.gpp3-0033-2018 · 2019 · External reference

Prokaryotic diversity in marine and freshwater recirculating aquaculture systems

10.1111/raq.12677 · 2022 · External reference

Integrating microbial community dynamics into life cycle assessment: towards a microbial dimension of aquaculture sustainability

10.1016/j.scitotenv.2026.181955 · 2026 · External reference

Antimicrobial resistance in aquaculture an overview of current status and possible solutions to the issue

10.1007/s44274-026-00773-6 · 2026 · External reference

Influence of aquaculture practices on microbiota composition and pathogen abundance in pond ecosystems in South China

2025 · External reference

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

10.1101/gr.186072.114 · 2015 · External reference

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

10.1038/s41564-017-0012-7 · 2017 · External reference

List of prokaryotic names with standing in nomenclature (LPSN) moves to the DSMZ

10.1099/ijsem.0.004332 · 2020 · External reference

Using SPAdes De Novo Assembler

10.1002/cpbi.102 · 2020 · External reference

Unresolved reference

2025 · External reference

Bioeconomic analysis of the environmental impact of a marine fish farm

10.1016/j.jenvman.2015.04.034 · 2015 · External reference

Aquaculture at the crossroads of global warming and antimicrobial resistance

10.1038/s41467-020-15735-6 · 2020 · External reference

Shewanella and photobacterium spp. in oysters and seawater from the Delaware Bay

10.1128/aem.00060-08 · 2008 · External reference

High prevalence of antimicrobial resistance in Escherichia coli, Salmonella spp. and Staphylococcus aureus isolated from fish samples in India

10.1111/are.14471 · 2020 · External reference

Vibriosis outbreaks in aquaculture: addressing environmental and public health concerns and preventive therapies using gilthead seabream farming as a model system

10.3389/fmicb.2022.904815 · 2022 · External reference

Prevalence and distribution analysis of antibiotic resistance genes in a large-scale aquaculture environment

10.1016/j.scitotenv.2019.134626 · 2020 · External reference

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy

10.1038/s41564-018-0171-1 · 2018 · External reference

Aurantivirga profunda gen. nov., sp. Nov., isolated from deep-seawater, a novel member of the family flavobacteriaceae

10.1099/ijsem.0.000662 · 2015 · External reference

Using satellite data to locate fish farms in the Aegean Sea

10.3390/earth6040125 · 2025 · External reference

Bacterial community in Sinonovacula constricta intestine and its relationship with culture environment

10.1007/s00253-022-12048-0 · 2022 · External reference

The influence of marine fish farming on water and sediment quality: Ildır Bay (Aegean Sea)

10.1007/s10661-020-08487-9 · 2020 · External reference

Unresolved reference

2015 · External reference

Climate influence on vibrio and associated human diseases during the past half-century in the coastal North Atlantic

10.1073/pnas.1609157113 · 2016 · External reference

Particle-attached bacteria act as gatekeepers in the decomposition of complex phytoplankton polysaccharides

10.1186/s40168-024-01757-5 · 2024 · External reference

Metagenomic analysis of antibiotic resistance genes in coastal industrial mariculture systems

10.1016/j.biortech.2018.01.035 · 2018 · External reference

The rising tide of antimicrobial resistance in aquaculture: sources, sinks and solutions

10.3390/md15060158 · 2017 · External reference

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

10.1093/bioinformatics/btv638 · 2016 · External reference

Shewanella infection in humans: epidemiology, clinical features and pathogenicity

10.1080/21505594.2022.2117831 · 2022 · External reference

A review of antibiotics, antibiotic resistant bacteria, and resistance genes in aquaculture: occurrence, contamination, and transmission

10.3390/toxics11050420 · 2023 · External reference

An omics-based framework for assessing the health risk of antimicrobial resistance genes

10.1038/s41467-021-25096-3 · 2021 · External reference