Research graph
References from Isolation of Bacillus subtilis NJ01 and in silico evaluation of its antimicrobial metabolites as potential inhibitors of the CRN8 effector protein of Phytophthora infestans. Local targets link to admitted publications; unresolved targets remain external evidence.
Emerging microbial biocontrol strategies for plant pathogens
10.1016/j.plantsci.2017.11.012 · 2018 · External reference
Bacterial and fungal biocontrol agents for plant disease protection: journey from lab to field, current status, challenges, and global perspectives
10.3390/molecules28186735 · 2023 · External reference
Antibiotic resistance
10.1016/j.jiph.2016.08.007 · 2017 · External reference
Pathogenicity and virulence of Phytophthora infestans : the ever-evolving threat to food security and its sustainable management strategies
10.1080/21505594.2025.2586882 · 2025 · External reference
Nematicidal volatiles from Bacillus atrophaeus GBSC56 promote growth and stimulate induced systemic resistance in tomato against Meloidogyne incognita
10.3390/ijms22095049 · 2021 · External reference
Phenethyl alcohol glycosides and isopentenol glycoside from fruit of Bupleurum falcatum
10.1016/s0031-9422(99)00073-4 · 1999 · External reference
Ameliorative sexual behavior and Phosphodiesterase-5 inhibitory effects of spondias mangifera fruit extract in rodents: in silico, in vitro, and in vivo study
10.3390/jcm11133732 · 2022 · External reference
Induction of defense-related ultrastructural modifications in pea root tissues inoculated with endophytic bacteria
10.1104/pp.112.3.919 · 1996 · External reference
Unresolved reference
2016 · External reference
Microencapsulation of Bacillus subtilis B99-2 and its biocontrol efficiency against Rhizoctonia solani in tomato
10.1016/j.biocontrol.2015.05.013 · 2015 · External reference
Unresolved reference
2019 · External reference
Roles of bacillus endospores in the environment
10.1007/s00018-002-8433-7 · 2002 · External reference
MicroReview Bacillus subtilis antibiotics : structures
2005 · External reference
Versatile antagonistic activities of soil-borne bacillus spp . and pseudomonas spp
2018 · External reference
Unresolved reference
External reference
Unresolved reference
2008 · External reference
ScienceDirect the cell biology of late blight disease
10.1016/j.mib.2016.09.002 · 2016 · External reference
Five reasons to consider Phytophthora infestans a reemerging pathogen
10.1094/phyto-01-15-0005-fi · 2015 · External reference
Unresolved reference
External reference
The Irish potato famine pathogen Phytophthora infestans translocates the CRN8 kinase into host plant cells
10.1371/journal.ppat.1002875 · 2012 · External reference
Identification of medicinal plant-based phytochemicals as a potential inhibitor for SARS-CoV-2 main protease ( M pro ) using molecular docking and deep learning methods
10.1016/j.compbiomed.2023.106785 · 2023 · External reference
Unresolved reference
External reference
Identification and in silico molecular modelling study of newly isolated Bacillus subtilis SI-18 strain against S9 protein of Rhizoctonia solani
10.1016/j.arabjc.2020.09.044 · 2020 · External reference
Unresolved reference
2025 · External reference
Unresolved reference
2008 · External reference
Artificial intelligence (AI) in drug design and discovery: a comprehensive review
10.1016/j.insi.2025.100049 · 2025 · External reference
The BLAST sequence analysis tool
2013 · External reference
UFold: fast and accurate RNA secondary structure prediction with deep learning
10.1093/nar/gkab1074 · 2022 · External reference
Highly accurate protein structure prediction with AlphaFold
10.1038/s41586-021-03819-2 · 2021 · External reference
PROCHECK: a program to check the stereochemical quality of protein structures
10.1107/s0021889892009944 · 1993 · External reference
[20] VERIFY3D: assessment of protein models with three-dimensional profiles
10.1016/s0076-6879(97)77022-8 · 1997 · External reference
CASTp 3.0: computed atlas of surface topography of proteins
10.1093/nar/gky473 · 2018 · External reference
Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94
10.1002/(sici)1096-987x(199604)17:5/6<490::aid-jcc1>3.0.co;2-p · 1996 · External reference
AutoDock vina 1.2. 0: new docking methods, expanded force field, and python bindings
10.1021/acs.jcim.1c00203 · 2021 · External reference
SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules
10.1038/srep42717 · 2017 · External reference
ProTox-II: a webserver for the prediction of toxicity of chemicals
10.1093/nar/gky318 · 2018 · External reference
GROMACS: high performance molecular simulations through multi-level parallelism from laptops to supercomputers
10.1016/j.softx.2015.06.001 · 2015 · External reference
An overview of the amber biomolecular simulation package
10.1002/wcms.1121 · 2013 · External reference
The ACPYPE web server for small-molecule MD topology generation
10.1093/bioinformatics/btad350 · 2023 · External reference
Fast, efficient generation of high‐quality atomic charges. AM1‐BCC model: I. Method
10.1002/(sici)1096-987x(20000130)21:2<132::aid-jcc5>3.0.co;2-p · 2000 · External reference
Structure and dynamics of the TIP3P, SPC, and SPC/E water models at 298 K
10.1021/jp003020w · 2001 · External reference
Unresolved reference
1997 · External reference
Exploring the conformational landscapes of HIV protease structural ensembles using principal component analysis
10.1002/prot.25534 · 2018 · External reference
Molecular dynamics simulation, free energy landscape and binding free energy computations in exploration the anti-invasive activity of amygdalin against metastasis
10.1016/j.cmpb.2020.105660 · 2020 · External reference
Isolation and evaluation of Qatari soil rhizobacteria for antagonistic potential against phytopathogens and growth promotion in tomato plants
10.1038/s41598-023-49304-w · 2023 · External reference
Endophytic Bacillus subtilis H17‐16 effectively inhibits Phytophthora infestans, the pathogen of potato late blight, and its potential application
10.1002/ps.7717 · 2023 · External reference
Biological control of oomycete soilborne diseases caused by Phytophthora capsici, Phytophthora infestans, and Phytophthora nicotianae in solanaceous crops
10.1080/12298093.2022.2136333 · 2022 · External reference
Bacillus subtilis antibiotics: structures, syntheses and specific functions
10.1111/j.1365-2958.2005.04587.x · 2005 · External reference
Unresolved reference
2012 · External reference
Pan-genome analysis and molecular docking unveil the biocontrol potential of Bacillus velezensis VB7 against Phytophthora infestans
10.1016/j.micres.2022.127277 · 2023 · External reference
Bacterial and fungal biocontrol agents for plant disease protection: journey from lab to field, current status, challenges, and global perspectives
10.3390/molecules28186735 · 2023 · External reference
Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94
10.1002/(sici)1096-987x(199604)17:5/6<490::aid-jcc1>3.0.co;2-p · ExternalCitation · doi-reference
Fast, efficient generation of high‐quality atomic charges. AM1‐BCC model: I. Method
10.1002/(sici)1096-987x(20000130)21:2<132::aid-jcc5>3.0.co;2-p · ExternalCitation · doi-reference
Exploring the conformational landscapes of HIV protease structural ensembles using principal component analysis
10.1002/prot.25534 · ExternalCitation · doi-reference
Endophytic Bacillus subtilis H17‐16 effectively inhibits Phytophthora infestans, the pathogen of potato late blight, and its potential application
10.1002/ps.7717 · ExternalCitation · doi-reference
An overview of the amber biomolecular simulation package
10.1002/wcms.1121 · ExternalCitation · doi-reference
Roles of bacillus endospores in the environment
10.1007/s00018-002-8433-7 · ExternalCitation · doi-reference
Identification and in silico molecular modelling study of newly isolated Bacillus subtilis SI-18 strain against S9 protein of Rhizoctonia solani
10.1016/j.arabjc.2020.09.044 · ExternalCitation · doi-reference
Microencapsulation of Bacillus subtilis B99-2 and its biocontrol efficiency against Rhizoctonia solani in tomato
10.1016/j.biocontrol.2015.05.013 · ExternalCitation · doi-reference
Molecular dynamics simulation, free energy landscape and binding free energy computations in exploration the anti-invasive activity of amygdalin against metastasis
10.1016/j.cmpb.2020.105660 · ExternalCitation · doi-reference
Identification of medicinal plant-based phytochemicals as a potential inhibitor for SARS-CoV-2 main protease ( M pro ) using molecular docking and deep learning methods
10.1016/j.compbiomed.2023.106785 · ExternalCitation · doi-reference
Artificial intelligence (AI) in drug design and discovery: a comprehensive review
10.1016/j.insi.2025.100049 · ExternalCitation · doi-reference
Antibiotic resistance
10.1016/j.jiph.2016.08.007 · ExternalCitation · doi-reference
ScienceDirect the cell biology of late blight disease
10.1016/j.mib.2016.09.002 · ExternalCitation · doi-reference
Pan-genome analysis and molecular docking unveil the biocontrol potential of Bacillus velezensis VB7 against Phytophthora infestans
10.1016/j.micres.2022.127277 · ExternalCitation · doi-reference
Emerging microbial biocontrol strategies for plant pathogens
10.1016/j.plantsci.2017.11.012 · ExternalCitation · doi-reference
GROMACS: high performance molecular simulations through multi-level parallelism from laptops to supercomputers
10.1016/j.softx.2015.06.001 · ExternalCitation · doi-reference
Phenethyl alcohol glycosides and isopentenol glycoside from fruit of Bupleurum falcatum
10.1016/s0031-9422(99)00073-4 · ExternalCitation · doi-reference
[20] VERIFY3D: assessment of protein models with three-dimensional profiles
10.1016/s0076-6879(97)77022-8 · ExternalCitation · doi-reference
AutoDock vina 1.2. 0: new docking methods, expanded force field, and python bindings
10.1021/acs.jcim.1c00203 · ExternalCitation · doi-reference
Structure and dynamics of the TIP3P, SPC, and SPC/E water models at 298 K
10.1021/jp003020w · ExternalCitation · doi-reference
Highly accurate protein structure prediction with AlphaFold
10.1038/s41586-021-03819-2 · ExternalCitation · doi-reference
Isolation and evaluation of Qatari soil rhizobacteria for antagonistic potential against phytopathogens and growth promotion in tomato plants
10.1038/s41598-023-49304-w · ExternalCitation · doi-reference
SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules
10.1038/srep42717 · ExternalCitation · doi-reference
Biological control of oomycete soilborne diseases caused by Phytophthora capsici, Phytophthora infestans, and Phytophthora nicotianae in solanaceous crops
10.1080/12298093.2022.2136333 · ExternalCitation · doi-reference
Pathogenicity and virulence of Phytophthora infestans : the ever-evolving threat to food security and its sustainable management strategies
10.1080/21505594.2025.2586882 · ExternalCitation · doi-reference
The ACPYPE web server for small-molecule MD topology generation
10.1093/bioinformatics/btad350 · ExternalCitation · doi-reference
UFold: fast and accurate RNA secondary structure prediction with deep learning
10.1093/nar/gkab1074 · ExternalCitation · doi-reference
ProTox-II: a webserver for the prediction of toxicity of chemicals
10.1093/nar/gky318 · ExternalCitation · doi-reference
CASTp 3.0: computed atlas of surface topography of proteins
10.1093/nar/gky473 · ExternalCitation · doi-reference
Five reasons to consider Phytophthora infestans a reemerging pathogen
10.1094/phyto-01-15-0005-fi · ExternalCitation · doi-reference
Induction of defense-related ultrastructural modifications in pea root tissues inoculated with endophytic bacteria
10.1104/pp.112.3.919 · ExternalCitation · doi-reference
PROCHECK: a program to check the stereochemical quality of protein structures
10.1107/s0021889892009944 · ExternalCitation · doi-reference
Bacillus subtilis antibiotics: structures, syntheses and specific functions
10.1111/j.1365-2958.2005.04587.x · ExternalCitation · doi-reference
The Irish potato famine pathogen Phytophthora infestans translocates the CRN8 kinase into host plant cells
10.1371/journal.ppat.1002875 · ExternalCitation · doi-reference
Nematicidal volatiles from Bacillus atrophaeus GBSC56 promote growth and stimulate induced systemic resistance in tomato against Meloidogyne incognita
10.3390/ijms22095049 · ExternalCitation · doi-reference
Ameliorative sexual behavior and Phosphodiesterase-5 inhibitory effects of spondias mangifera fruit extract in rodents: in silico, in vitro, and in vivo study
10.3390/jcm11133732 · ExternalCitation · doi-reference
Bacterial and fungal biocontrol agents for plant disease protection: journey from lab to field, current status, challenges, and global perspectives
10.3390/molecules28186735 · ExternalCitation · doi-reference
