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References from A cross-families evaluation of using fecal samples as a method to study the amphibian gut microbiome. Local targets link to admitted publications; unresolved targets remain external evidence.
hilldiv: an R package for the integral analysis of diversity based on Hill numbers
2019 · External reference
Unresolved reference
External reference
Comparing the gut microbiome along the gastrointestinal tract of three sympatric species of wild rodents
10.1038/s41598-021-99379-6 · 2021 · External reference
Differences in microbial signatures between rectal mucosal biopsies and rectal swabs
10.4161/gmic.22157 · 2012 · External reference
Comparison of stool versus rectal swab samples and storage conditions on bacterial community profiles
10.1186/s12866-017-0983-9 · 2017 · External reference
Unresolved reference
External reference
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
10.1038/nmeth.2276 · 2013 · External reference
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
10.1038/s41587-019-0209-9 · 2019 · External reference
Rectal swabs for analysis of the intestinal microbiota
10.1371/journal.pone.0101344 · 2014 · External reference
DADA2: high-resolution sample inference from Illumina amplicon data
10.1038/nmeth.3869 · 2016 · External reference
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
10.1186/1471-2105-12-35 · 2011 · External reference
Gut biogeography of the bacterial microbiota
10.1038/nrmicro3552 · 2016 · External reference
Daily follow-up of bacterial communities in the human gut reveals stable composition and host-specific patterns of interaction
10.1111/j.1574-6941.2012.01368.x · 2012 · External reference
Gut microbiota in human metabolic health and disease
10.1038/s41579-020-0433-9 · 2020 · External reference
ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq
10.1371/journal.pone.0067019 · 2013 · External reference
A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): a basis for comparative gut microbial research
10.1038/srep30893 · 2016 · External reference
Comparative analysis of two nonlethal methods for the study of the gut bacterial communities in wild lizards
10.1111/1749-4877.12711 · 2023 · External reference
Unresolved reference
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Microbiota in health and disease
2022 · External reference
Comparing microbiome sampling methods in a wild mammal: fecal and intestinal samples record different signals of host ecology, evolution
10.3389/fmicb.2018.00803 · 2018 · External reference
Species abundance information improves sequence taxonomy classification accuracy
10.1038/s41467-019-12669-6 · 2019 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
10.1093/molbev/mst010 · 2013 · External reference
Are fecal samples an appropriate proxy for amphibian intestinal microbiota?
10.1002/ece3.10862 · 2024 · External reference
Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems
10.1186/1471-2105-12-253 · 2011 · External reference
MixMC: a multivariate statistical framework to gain insight into microbial communities
10.1371/journal.pone.0160169 · 2016 · External reference
Ecology and host identity outweigh evolutionary history in shaping the bat microbiome
10.1128/msystems.00511-19 · 2019 · External reference
Impact of winter enclosures on the gut bacterial microbiota of red deer in the Bavarian Forest National Park
10.2981/wlb.00503 · 2019 · External reference
Gut microbiota differences between paired intestinal wall and digesta samples in three small species of fish
10.7717/peerj.12992 · 2022 · External reference
In vitro alterations of intestinal bacterial microbiota in fecal samples during storage
10.1016/j.diagmicrobio.2004.08.012 · 2004 · External reference
Wildlife fecal microbiota exhibit community stability across a longitudinal semi-controlled non-invasive sampling experiment
10.3389/frmbi.2024.1274277 · 2024 · External reference
Unresolved reference
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
10.1093/nar/gks1219 · 2012 · External reference
Unresolved reference
2021 · External reference
RESCRIPt: reproducible sequence taxonomy reference database management
10.1371/journal.pcbi.1009581 · 2021 · External reference
mixOmics: an R package for ‘omics feature selection and multiple data integration
10.1371/journal.pcbi.1005752 · 2017 · External reference
Inferred metagenomic comparison of mucosal and fecal microbiota from individuals undergoing routine screening colonoscopy reveals similar differences observed during active inflammation
10.1080/19490976.2014.1000080 · 2015 · External reference
Measuring the gut microbiome in birds: comparison of faecal and cloacal sampling
10.1111/1755-0998.12744 · 2018 · External reference
Research status and prospect of amphibian symbiotic microbiota
2025 · External reference
Unresolved reference
2016 · External reference
Efficacy of fecal sampling as a gut proxy in the study of chicken gut microbiota
10.3389/fmicb.2019.02126 · 2019 · External reference
A comparison of nonlethal saFmpling methods for amphibian gut microbiome analyses
10.1111/1755-0998.13139 · 2020 · External reference
Editorial: the wildlife gut microbiome and its implication for conservation biology
2021 · External reference
