Research graph
References from Hermes: Seamless delivery of containerized bioinformatics workflows in hybrid cloud (HTC) environments. Local targets link to admitted publications; unresolved targets remain external evidence.
Genotyping in the cloud with crossbow
10.1002/0471250953.bi1503s39 · 2012 · External reference
Rainbow: An integrated tool for efficient clustering and assembling RAD-seq reads
10.1093/bioinformatics/bts482 · 2012 · External reference
CloudMap: A cloud-based pipeline for analysis of mutant genome sequences
10.1534/genetics.112.144204 · 2012 · External reference
CloudBurst: highly sensitive read mapping with MapReduce
10.1093/bioinformatics/btp236 · 2009 · External reference
A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples
10.1101/gr.171934.113 · 2014 · External reference
Cloud computing for comparative genomics
10.1186/1471-2105-11-259 · 2010 · External reference
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
10.1186/gb-2010-11-8-r86 · 2010 · External reference
Galaxy CloudMan: Delivering cloud compute clusters
10.1186/1471-2105-11-s12-s4 · 2010 · External reference
Launching genomics into the cloud: Deployment of Mercury, a next generation sequence analysis pipeline
10.1186/1471-2105-15-30 · 2014 · External reference
Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses
10.1016/j.jbi.2014.01.005 · 2014 · External reference
DDBJ read annotation pipeline: A cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data
10.1093/dnares/dst017 · 2013 · External reference
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
10.1093/bioinformatics/btt731 · 2014 · External reference
10.1109/bigdata.2013.6691723
10.1109/bigdata.2013.6691723 · External reference
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud
10.1093/nar/gkt328 · 2013 · External reference
KNIME: The Konstanz information miner
2008 · External reference
Scientific workflow management and the Kepler system
10.1002/cpe.994 · 2006 · External reference
10.1109/services.2007.63
10.1109/services.2007.63 · External reference
10.1109/dcs.1988.12507
10.1109/dcs.1988.12507 · External reference
Pegasus: A framework for mapping complex scientific workflows onto distributed systems
2005 · External reference
Docker: Lightweight Linux containers for consistent development and deployment
2014 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1145/1383422.1383435
10.1145/1383422.1383435 · External reference
Metagenomics or megagenomics?
10.1038/nrmicro1185 · 2005 · External reference
Ten years of pan-genome analyses
10.1016/j.mib.2014.11.016 · 2015 · External reference
Assigning protein functions by comparative genome analysis: protein phylogenetic profiles
10.1073/pnas.96.8.4285 · 1999 · External reference
Detection of genomic idiosyncrasies using fuzzy phylogenetic profiles
10.1371/journal.pone.0052854 · 2013 · External reference
NCBI Reference Sequence RefSeq: A curated non-redundant sequence database of genomes, transcripts and proteins
2005 · External reference
Basic local alignment search tool BLAST
2008 · External reference
̃okeanos: Building a cloud, cluster by cluster
10.1109/mic.2013.43 · 2013 · External reference
Amdahl’s law in the multicore era
10.1109/mc.2008.209 · 2008 · External reference
