Research graph
References from Grapevine yellow mosaic is associated with stress-driven premature senescence and early photosynthetic decline. Local targets link to admitted publications; unresolved targets remain external evidence.
Transmission of strains of grape- vine fanleaf virus by Xiphinema index
1974 · External reference
Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants
10.1002/j.1460-2075.1996.tb00640.x · 1996 · External reference
The specific transmission of Grapevine fanleaf virus by its nematode vector xiphinema index is solely determined by the viral coat protein
10.1016/j.virol.2003.11.022 · 2004 · External reference
Classification and comparison of small RNAs from plants
10.1146/annurev-arplant-050312-120043 · 2013 · External reference
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
10.1089/cmb.2012.0021 · 2012 · External reference
Transcriptome analysis reveals differentially expressed small RNAs and genes associated with grapevine leafroll-associated virus 3 infections
10.1016/j.pmpp.2017.10.006 · 2017 · External reference
Chloroplast: the Trojan horse in plant–virus interaction
10.1111/mpp.12533 · 2018 · External reference
Biotic stress globally downregulates photosynthesis genes
10.1111/j.1365-3040.2010.02167.x · 2010 · External reference
Transcriptome meta-analysis identifies candidate hub genes and pathways of pathogen stress responses in Arabidopsis thaliana
10.3390/biology11081155 · 2022 · External reference
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis
10.1111/j.1365-313x.2005.02399.x · 2005 · External reference
Sensitive protein alignments at tree-of-life scale using DIAMOND
10.1038/s41592-021-01101-x · 2021 · External reference
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-seq data
10.1093/gigascience/giz100 · 2019 · External reference
Cloning and characterization of small non-coding RNAs from grape
10.1111/j.1365-313x.2009.03906.x · 2009 · External reference
A cetyltrimethylammonium bromide-based method to extract low-molecular-weight RNA from polysaccharide-rich plant tissues
10.1016/j.ab.2006.09.022 · 2007 · External reference
Tomato chlorosis virus infection represses chloroplast related genes in tomato
10.1016/j.pmpp.2021.101722 · 2021 · External reference
Photosynthesis responses to the infection with plant pathogens
10.1094/mpmi-05-24-0052-cr · 2025 · External reference
Real-time quantification of microRNAs by stem–loop RT–PCR
10.1093/nar/gni178 · 2005 · External reference
Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis
10.1073/pnas.0611119104 · 2007 · External reference
High-throughput-sequencing-based identification of a grapevine fanleaf virus satellite RNA in Vitis vinifera
10.1007/s00705-016-2776-0 · 2016 · External reference
Mutations in the WG and GW motifs of the three RNA silencing suppressors of grapevine fanleaf virus alter their systemic suppression ability and affect virus infectivity
10.3389/fmicb.2024.1451285 · 2024 · External reference
Grapevine Fanleaf Virus RNA1-encoded proteins 1A and 1BHel suppress RNA silencing
10.1094/mpmi-01-23-0008-r · 2023 · External reference
psRNATarget: a plant small RNA target analysis server (2017 release)
10.1093/nar/gky316 · 2018 · External reference
Twelve years of SAMtools and BCFtools
10.1093/gigascience/giab008 · 2021 · External reference
Targeted disruption of the plastid RNA polymerase genes rpoA , B and C1 : molecular biology, biochemistry and ultrastructure
10.1046/j.1365-313x.1999.00473.x · 1999 · External reference
miR403a and SA are involved in NbAGO2 mediated antiviral defenses against TMV infection in Nicotiana benthamiana
10.3390/genes10070526 · 2019 · External reference
Host range and properties of grapevine fanleaf and grapevine yellow mosaic viruses
10.1111/j.1744-7348.1963.tb03677.x · 1963 · External reference
Grapevine fanleaf virus and other old world nepoviruses
2017 · External reference
Chloroplast dismantling in leaf senescence
10.1093/jxb/erab200 · 2021 · External reference
The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes
10.1046/j.1365-313x.2000.00722.x · 2000 · External reference
Ensembl 2025
10.1093/nar/gkae1071 · 2025 · External reference
Phylogenetic and recombination analysis of the homing protein domain of grapevine fanleaf virus (GFLV) isolates associated with ‘yellow mosaic’ and ‘infectious malformation’ syndromes in grapevine
10.1007/s00705-014-2138-8 · 2014 · External reference
Senescence-associated genes induced during compatible viral interactions with grapevine and arabidopsis
10.1093/jxb/erm165 · 2007 · External reference
Absolute quantification of viruses by TaqMan real-time RT-PCR in grapevines
10.1590/0103-8478cr20161063 · 2017 · External reference
The nucleotide sequence of satellite RNA in Grapevine Fanleaf Virus, strain F13
10.1099/0022-1317-70-4-955 · 1989 · External reference
Protein 2A of grapevine fanleaf nepovirus is implicated in RNA2 replication and colocalizes to the replication site
10.1006/viro.1999.9927 · 1999 · External reference
Application of high-throughput sequencing for comprehensive virome profiling in grapevines shows yellows in Iran
10.3390/v16020204 · 2024 · External reference
Symptom recovery in virus-infected plants: revisiting the role of RNA silencing mechanisms
10.1016/j.virol.2015.01.008 · 2015 · External reference
Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer
10.1093/molbev/msn226 · 2009 · External reference
Genetic variability, evolution, and biological effects of grapevine fanleaf virus satellite RNAs
10.1094/phyto-11-12-0310-r · 2013 · External reference
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
10.1186/s13059-018-1618-7 · 2019 · External reference
Leaf senescence: progression, regulation, and application
10.1186/s43897-021-00006-9 · 2021 · External reference
Chlorophyll degradation during senescence
10.1146/annurev.arplant.57.032905.105212 · 2006 · External reference
The DAVID gene functional classification tool: a novel biological module-centric algorithm to functionally analyze large gene lists
10.1186/gb-2007-8-9-r183 · 2007 · External reference
Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids
10.1186/1471-2148-6-32 · 2006 · External reference
Unraveling the mechanisms of virus-induced symptom development in plants
10.3390/plants12152830 · 2023 · External reference
Recovery of Nicotiana benthamiana plants from a necrotic response induced by a nepovirus is associated with RNA silencing but not with reduced virus titer
10.1128/jvi.01192-07 · 2007 · External reference
The cytochrome P450 superfamily: key players in plant development and defense
10.1016/s2095-3119(14)60980-1 · 2015 · External reference
A Ycf2-FtsHi heteromeric AAA-ATPase complex is required for chloroplast protein import
10.1105/tpc.18.00357 · 2018 · External reference
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
10.1038/s41587-019-0201-4 · 2019 · External reference
CHLOROPLAST UNUSUAL POSITIONING 1 is a plant-specific actin polymerization factor regulating chloroplast movement
10.1093/plcell/koad320 · 2024 · External reference
Grapevine yellow speckle agent implicated in the aetiology of vein banding disease
1983 · External reference
Characterization of grapevine fanleaf virus isolates in ‘chardonnay’vines exhibiting severe and mild symptoms in two vineyards
10.3390/v14102303 · 2022 · External reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
10.1093/bioinformatics/btl158 · 2006 · External reference
Regulatory network of microRNA399 and PHO2 by systemic signaling
10.1104/pp.108.116269 · 2008 · External reference
Analysis of relative gene expression data using real-time quantitative PCR and the 2- ΔΔCT method
10.1006/meth.2001.1262 · 2001 · External reference
Differential analysis of count data–the DESeq2 package
2014 · External reference
Chloroplasts at the crossroad of photosynthesis, pathogen infection and plant defense
10.3390/ijms19123900 · 2018 · External reference
Plant disease resistance outputs regulated by AP2/ERF transcription factor family
10.1007/s44154-023-00140-y · 2024 · External reference
Improved RNA extraction from Woody plants for the detection of viral pathogens by reverse transcription-polymerase chain reaction
10.1094/pdis.1997.81.2.222 · 1997 · External reference
The effects of viruses and viral diseases on grapes and wine
2017 · External reference
Grapevine-infecting viruses
2014 · External reference
Graft-transmissible diseases of grapevines: handbook for detection and diagnosis
1993 · External reference
Severe stunting symptoms upon nepovirus infection are reminiscent of a chronic hypersensitive-like response in a perennial woody fruit crop
10.3390/v13112138 · 2021 · External reference
Cutadapt removes adapter sequences from high-throughput sequencing reads
10.14806/ej.17.1.200 · 2011 · External reference
RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
10.1038/nrg3683 · 2014 · External reference
Genome‐wide identification of viral and host transcripts targeted by viral siRNAs in V itis vinifera
10.1111/j.1364-3703.2012.00828.x · 2013 · External reference
Epigenetic mechanisms of senescence in plants
10.3390/cells11020251 · 2022 · External reference
Ultrastructural analyses of senescence associated dismantling of chloroplasts revisited
2013 · External reference
Chloroplast outer envelope protein CHUP1 is essential for chloroplast anchorage to the plasma membrane and chloroplast movement
10.1104/pp.108.123075 · 2008 · External reference
Genetic structure and molecular variability of Grapevine fanleaf virus populations
10.1016/j.virusres.2010.05.017 · 2010 · External reference
Identification, characterization, and verification of miR399 target gene in grape
10.1016/j.hpj.2023.02.009 · 2024 · External reference
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
10.1038/nprot.2016.095 · 2016 · External reference
PatMaN: rapid alignment of short sequences to large databases
10.1093/bioinformatics/btn223 · 2008 · External reference
A conserved HSF :miR169: NF-YA loop involved in tomato and arabidopsis heat stress tolerance
10.1111/tpj.15963 · 2022 · External reference
An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
10.1186/1471-2229-6-27 · 2006 · External reference
G: profiler—a web server for functional interpretation of gene lists (2016 update)
10.1093/nar/gkw199 · 2016 · External reference
ABA-mediated responses to water deficit separate grapevine genotypes by their genetic background
10.1186/s12870-016-0778-4 · 2016 · External reference
Curvature thylakoid 1 proteins modulate prolamellar body morphology and promote organized thylakoid biogenesis in Arabidopsis thaliana
10.1073/pnas.2113934118 · 2021 · External reference
BUSCO: assessing genome assembly and annotation completeness
10.1007/978-1-4939-9173-0_14 · 2019 · External reference
Cytoscape: a software environment for integrated models of biomolecular interaction networks
10.1101/gr.1239303 · 2003 · External reference
Transcriptomic analyses of grapevine leafroll-associated virus 3 infection in leaves and berries of ‘Cabernet franc
10.3390/v14081831 · 2022 · External reference
Expression of ABA synthesis and metabolism genes under different irrigation strategies and atmospheric VPDs is associated with stomatal conductance in grapevine (Vitis vinifera L. cv Cabernet Sauvignon)
10.1093/jxb/ert052 · 2013 · External reference
The SAUR gene family: the plant’s toolbox for adaptation of growth and development
10.1093/jxb/ery332 · 2019 · External reference
The role of AP2/ERF transcription factors in plant responses to biotic stress
10.3390/ijms26104921 · 2025 · External reference
The vein-banding disease syndrome: a synergistic reaction between grapevine viroids and fanleaf virus
1995 · External reference
Chlorophyll catabolism precedes changes in chloroplast structure and proteome during leaf senescence
10.1002/pld3.127 · 2019 · External reference
Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs
10.1186/1746-4811-3-12 · 2007 · External reference
De novotranscriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity
10.1186/1471-2164-14-41 · 2013 · External reference
Population structure and genetic variability within isolates of Grapevine fanleaf virus from a naturally infected vineyard in France: evidence for mixed infection and recombination
10.1099/vir.0.79904-0 · 2004 · External reference
Multiple interspecies recombination events within RNA2 of Grapevine fanleaf virus and Arabis mosaic virus
10.1007/s00705-008-0182-y · 2008 · External reference
Biologically active transcripts from cloned cDNA of genomic grapevine fanleaf nepovirus RNAs
10.1099/0022-1317-74-2-169 · 1993 · External reference
Long-reads reveal that the chloroplast genome exists in two distinct versions in most plants
2019 · External reference
Superstar microRNA, miR156, involved in plant biological processes and stress response: a review
10.1016/j.scienta.2023.112010 · 2023 · External reference
clusterProfiler 4.0: a universal enrichment tool for interpreting omics data
2021 · External reference
clusterProfiler: an R package for comparing biological themes among gene clusters
10.1089/omi.2011.0118 · 2012 · External reference
Negative regulatory role of non-coding RNA vvi-miR3633a in grapevine leaves and callus under heat stress
10.3390/horticulturae10090983 · 2024 · External reference
Genetic network between leaf senescence and plant immunity: crucial regulatory nodes and new insights
10.3390/plants9040495 · 2020 · External reference
Chloroplast in plant-virus interaction
10.3389/fmicb.2016.01565 · 2016 · External reference
