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References from Genome-wide identification of G-quadruplex forming regions in Arabidopsis: Unraveling the role of Pif1 like helicase (AtPLH1) in gene regulation. Local targets link to admitted publications; unresolved targets remain external evidence.
Inactivation of Pif1 helicase causes a mitochondrial myopathy in mice
10.1016/j.mito.2016.02.005 · 2016 · External reference
Petite Integration Factor 1 (PIF1) helicase deficiency increases weight gain in Western diet-fed female mice without increased inflammatory markers or decreased glucose clearance
10.1371/journal.pone.0203101 · 2019 · External reference
Quantitative visualization of DNA G-quadruplex structures in human cells
10.1038/nchem.1548 · 2013 · External reference
The Pif1 family in prokaryotes: what are our helicases doing in your bacteria?
10.1091/mbc.e11-01-0045 · 2011 · External reference
Unwinding the functions of the Pif1 family helicases
10.1016/j.dnarep.2010.01.008 · 2010 · External reference
Structure and function of Pif1 helicase
10.1042/bst20170096 · 2017 · External reference
High-throughput sequencing of DNA G-quadruplex structures in the human genome
10.1038/nbt.3295 · 2015 · External reference
BABY BOOM regulates early embryo and endosperm development
10.1073/pnas.2201761119 · 2022 · External reference
Crystal structures of the BsPif1 helicase reveal that a major movement of the 2B SH3 domain is required for DNA unwinding
10.1093/nar/gkw033 · 2016 · External reference
The transcription factor MYB40 is a central regulator in arsenic resistance in Arabidopsis
10.1016/j.xplc.2021.100234 · 2021 · External reference
The bHLH proteins BEE and BIM positively modulate the shade avoidance syndrome in Arabidopsis seedlings
10.1111/tpj.12264 · 2013 · External reference
Verification of protein structures: patterns of nonbonded atomic interactions
10.1002/pro.5560020916 · 1993 · External reference
CUP-SHAPED COTYLEDON1 (CUC1) and CUC2 regulate cytokinin homeostasis to determine ovule number in Arabidopsis
10.1093/jxb/ery281 · 2018 · External reference
Four IVa bHLH transcription factors are novel interactors of FIT and mediate ja inhibition of iron uptake in arabidopsis
10.1016/j.molp.2018.06.005 · 2018 · External reference
Pif1 is essential for efficient replisome progression through lagging strand G-quadruplex DNA secondary structures
10.1093/nar/gky1065 · 2018 · External reference
Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence
10.1093/nar/gkm522 · 2007 · External reference
The newly sequenced genome of Pisum Sativum is replete with potential G-quadruplex-forming sequences-implications for evolution and biological regulation
10.3390/ijms23158482 · 2022 · External reference
VERIFY3D: assessment of protein models with three-dimensional profiles
10.1016/s0076-6879(97)77022-8 · 1997 · External reference
G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions
10.1038/s41588-023-01437-4 · 2023 · External reference
Epigenomic features of DNA G-quadruplexes and their roles in regulating rice gene transcription
10.1093/plphys/kiab566 · 2022 · External reference
LHP1 could act as an activator and a repressor of transcription in plants
10.3389/fpls.2017.02041 · 2017 · External reference
Accessing the inaccessible: the organization, transcription, replication, and repair of heterochromatin in plants
10.1146/annurev-genet-112414-055048 · 2015 · External reference
Side-by-side comparison of G-quadruplex (G4) capture efficiency of the antibody BG4 versus the small-molecule ligands TASQs
10.1016/j.isci.2023.106846 · 2023 · External reference
Dark-inducible genes from Arabidopsis thaliana are associated with leaf senescence and repressed by sugars
10.1034/j.1399-3054.2001.1110312.x · 2001 · External reference
Guanidine production by plant homoarginine-6-hydroxylases
10.7554/elife.91458.3 · 2024 · External reference
PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development
10.1038/nature06206 · 2007 · External reference
Genome-wide discovery of G-quadruplex forming sequences and their functional relevance in plants
10.1038/srep28211 · 2016 · External reference
MYB20, MYB42, MYB43, and MYB85 regulate phenylalanine and lignin biosynthesis during secondary cell wall formation
10.1104/pp.19.01070 · 2020 · External reference
Single-cell telomere-length quantification couples telomere length to meristem activity and stem cell development in Arabidopsis
10.1016/j.celrep.2015.04.013 · 2015 · External reference
Identification and characterization of nucleolin as a c-myc G-quadruplex-binding protein
10.1074/jbc.m109.018028 · 2009 · External reference
Non-B DNA: a major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome
10.1093/nar/gkaa1269 · 2021 · External reference
Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes
10.1038/s41477-022-01282-z · 2022 · External reference
Helicase motifs: the engine that powers DNA unwinding
10.1046/j.1365-2958.1999.01659.x · 1999 · External reference
A DNA polymerase stop assay for G-quadruplex-interactive compounds
10.1093/nar/27.2.537 · 1999 · External reference
Genome-wide mapping of endogenous G-quadruplex DNA structures by chromatin immunoprecipitation and high-throughput sequencing
10.1038/nprot.2017.150 · 2018 · External reference
Cation-dependent transition between the quadruplex and Watson-Crick hairpin forms of d(CGCG3GCG)
10.1021/bi00118a028 · 1992 · External reference
The T4 phage SF1B helicase Dda is structurally optimized to perform DNA strand separation
10.1016/j.str.2012.04.013 · 2012 · External reference
Detection of G-quadruplex DNA in mammalian cells
10.1093/nar/gkt957 · 2013 · External reference
Pif1 helicases and the evidence for a prokaryotic origin of Helitrons
10.1093/molbev/msab334 · 2022 · External reference
Jasmonate regulates the inducer of cbf expression-C-repeat binding factor/DRE binding factor 1 cascade and freezing tolerance in Arabidopsis
10.1105/tpc.113.112631 · 2013 · External reference
Prevalence of quadruplexes in the human genome
10.1093/nar/gki609 · 2005 · External reference
Wound-inducible WUSCHEL-RELATED HOMEOBOX 13 is required for callus growth and organ reconnection
10.1093/plphys/kiab510 · 2022 · External reference
Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases
10.1038/nature09290 · 2010 · External reference
WRKY transcription factors in plant defense
10.1016/j.tig.2023.07.001 · 2023 · External reference
BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK
10.1105/tpc.104.030130 · 2005 · External reference
The large bat Helitron DNA transposase forms a compact monomeric assembly that buries and protects its covalently bound 5′-transposon end
10.1016/j.molcel.2021.07.028 · 2021 · External reference
G-quadruplexes: prediction, characterization, and biological application
10.1016/j.tibtech.2017.06.012 · 2017 · External reference
The cellular protein nucleolin preferentially binds long-looped G-quadruplex nucleic acids
10.1016/j.bbagen.2016.11.036 · 2017 · External reference
Direct visualization of both DNA and RNA quadruplexes in human cells via an uncommon spectroscopic method
10.1038/srep32141 · 2016 · External reference
PROCHECK: a program to check the stereochemical quality of protein structures
10.1107/s0021889892009944 · 1993 · External reference
R-loop induced G-quadruplex in non-template promotes transcription by successive R-loop formation
10.1038/s41467-020-17176-7 · 2020 · External reference
Pif1 regulates telomere length by preferentially removing telomerase from long telomere ends
10.1093/nar/gku541 · 2014 · External reference
PIF1 helicase promotes break-induced replication in mammalian cells
10.15252/embj.2020104509 · 2021 · External reference
The phytochrome interacting proteins ERF55 and ERF58 repress light-induced seed germination in Arabidopsis thaliana
10.1038/s41467-022-29315-3 · 2022 · External reference
Priming crops for the future: rewiring stress memory
10.1016/j.tplants.2021.11.015 · 2022 · External reference
PCSD: a plant chromatin state database
10.1093/nar/gkx919 · 2018 · External reference
Non-hexameric DNA helicases and translocases: mechanisms and regulation
10.1038/nrm2394 · 2008 · External reference
Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase
10.1093/nar/gkx1217 · 2018 · External reference
Identification and functional characterization of G-quadruplexes in plants
10.1016/j.tplants.2022.03.015 · 2022 · External reference
Noncanonical DNA structures are drivers of genome evolution
10.1016/j.tig.2022.11.005 · 2023 · External reference
Whole genome experimental maps of DNA G-quadruplexes in multiple species
10.1093/nar/gkz179 · 2019 · External reference
Comprehensive in silico modeling of the rice plant PRR Xa21 and its interaction with RaxX21-sY and OsSERK2
10.1039/d0ra01396j · 2020 · External reference
Yeast genome maintenance by the multifunctional PIF1 DNA helicase family
10.3390/genes11020224 · 2020 · External reference
DNA replication through G-quadruplex motifs is promoted by the Saccharomyces cerevisiae Pif1 DNA helicase
10.1016/j.cell.2011.04.015 · 2011 · External reference
Computational-based insights into the phylogeny, structure, and function of Rhodococcus alkane-1-monooxygenase
10.1007/s13205-020-02388-x · 2020 · External reference
How shelterin protects mammalian telomeres
10.1146/annurev.genet.41.110306.130350 · 2008 · External reference
Evidence for and characterization of Ca2+ binding to the catalytic region of Arabidopsis thaliana phospholipase Dbeta
10.1074/jbc.m402789200 · 2004 · External reference
G-quadruplexes and their regulatory roles in biology
10.1093/nar/gkv862 · 2015 · External reference
A novel small molecule that alters shelterin integrity and triggers a DNA-damage response at telomeres
10.1021/ja805615w · 2008 · External reference
WRKY transcription factors and ethylene signaling modify root growth during the shade-avoidance response
10.1093/plphys/kiab493 · 2022 · External reference
Characterization of the Helicase activity of Pif-like Helicases from Arabidopsis thaliana and role in gene regulation and abiotic stress response
10.1016/j.plaphy.2025.109771 · 2025 · External reference
Molecular regulation of CBF signaling in cold acclimation
10.1016/j.tplants.2018.04.002 · 2018 · External reference
The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation
10.1105/tpc.114.123703 · 2014 · External reference
DOTASQ as a prototype of nature-inspired G-quadruplex ligand
10.1039/c0cc04960c · 2011 · External reference
The DNA helicase Pfh1 promotes fork merging at replication termination sites to ensure genome stability
10.1101/gad.184663.111 · 2012 · External reference
Crystal structure of a DExx box DNA helicase
10.1038/384379a0 · 1996 · External reference
The regulation and functions of DNA and RNA G-quadruplexes
10.1038/s41580-020-0236-x · 2020 · External reference
Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
10.1016/s0092-8674(00)80716-3 · 1999 · External reference
Solution structure of the human telomeric repeat d[AG(3)(T(2) AG(3))3] G-tetraplex
10.1016/0969-2126(93)90015-9 · 1993 · External reference
A comprehensive evaluation of a typical plant telomeric G-quadruplex (G4) DNA reveals the dynamics of G4 formation, rearrangement, and unfolding
10.1074/jbc.ra119.012383 · 2020 · External reference
FANCJ helicase defective in Fanconia anemia and breast cancer unwinds G-quadruplex DNA to defend genomic stability
10.1128/mcb.02210-07 · 2008 · External reference
AP2/ERF transcription factor regulatory networks in hormone and abiotic stress responses in arabidopsis
10.3389/fpls.2019.00228 · 2019 · External reference
Phase separation of GRP7 facilitated by FERONIA-mediated phosphorylation inhibits mRNA translation to modulate plant temperature resilience
10.1016/j.molp.2024.02.001 · 2024 · External reference
The R-loop is a common chromatin feature of the Arabidopsis genome
10.1038/s41477-017-0004-x · 2017 · External reference
RNA G-quadruplex structures exist and function in vivo in plants
10.1186/s13059-020-02142-9 · 2020 · External reference
RNA G-quadruplex structure contributes to cold adaptation in plants
10.1038/s41467-022-34040-y · 2022 · External reference
H2AK121ub in Arabidopsis associates with a less accessible chromatin state at transcriptional regulation hotspots
10.1038/s41467-020-20614-1 · 2021 · External reference
Overexpression of AHL proteins enhances root hair production by altering the transcription of RHD6-downstream genes
10.1002/pld3.517 · 2020 · External reference
Histone H2A monoubiquitination marks are targeted to specific sites by cohesin subunits in Arabidopsis
10.1038/s41467-023-36788-3 · 2023 · External reference
The transcription factor MYB43 antagonizes with ICE1 to regulate freezing tolerance in Arabidopsis
10.1111/nph.18882 · 2023 · External reference
Periodic DNA patrolling underlies diverse functions of Pif1 on R-loops and G-rich DNA
10.7554/elife.02190 · 2014 · External reference
Structural and Functional Insights into the Unwinding Mechanism of Bacteroides sp Pif1
10.1016/j.celrep.2016.02.008 · 2016 · External reference
