Research graph
References from Williamsia profundi sp. nov., a novel deep-sea Actinomycetota isolate with versatile metabolic potential and specialized ecological adaptability. Local targets link to admitted publications; unresolved targets remain external evidence.
PLFA profiling of coal mine spoil: an integrated approach for the assessment of ecological restoration
10.18311/jeoh/2022/29162 · 2022 · External reference
Differences in metagenome coverage may confound abundance-based and diversity conclusions and how to deal with them
10.1093/ismeco/ycaf140 · 2025 · External reference
Carbohydrate esterases: An overview
2018 · External reference
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
10.1093/nar/gkz310 · 2019 · External reference
antiSMASH 6.0: improving cluster detection and comparison capabilities
10.1093/nar/gkab335 · 2021 · External reference
Molecular identification of differentially regulated genes in the hydrothermal-vent species Bathymodiolus thermophilus and Paralvinella pandorae in response to temperature
10.1186/1471-2164-10-222 · 2009 · External reference
Structures and mechanisms of glycosyltransferases
10.1093/glycob/cwj016 · 2006 · External reference
imGLAD: accurate detection and quantification of target organisms in metagenomes
10.7717/peerj.5882 · 2018 · External reference
Fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Discovery of a novel marine Bacteroidetes with a rich repertoire of carbohydrate-active enzymes
10.1016/j.csbj.2023.12.025 · 2024 · External reference
Comparison of two kinds of Biolog microplates (GN and ECO) in their ability to distinguish among aquatic microbial communities
10.1016/s0167-7012(99)00034-2 · 1999 · External reference
An ANIr-based methodology to determine if two sequence-discrete populations are identical and identify cosmopolitan prokaryotic populations
10.1093/ismeco/ycag068 · 2026 · External reference
An evolving hierarchical family classification for glycosyltransferases
10.1016/s0022-2836(03)00307-3 · 2003 · External reference
Recent structural insights into the expanding world of carbohydrate-active enzymes
10.1016/j.sbi.2005.10.008 · 2005 · External reference
Williamsia aurantiacus sp. nov., a novel actinobacterium producer of antimicrobial compounds isolated from the marine sponge
10.1007/s00203-019-01633-z · 2019 · External reference
Actinomycetes: a never-ending source of bioactive compounds—an overview on antibiotics production
10.3390/antibiotics10050483 · 2021 · External reference
The carbohydrate-active enzyme database: functions and literature
10.1093/nar/gkab1045 · 2022 · External reference
Evolutionary trees from DNA sequences: a maximum likelihood approach
10.1007/bf01734359 · 1981 · External reference
Confidence limits on phylogenies: an approach using the bootstrap
10.1111/j.1558-5646.1985.tb00420.x · 1985 · External reference
Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes
10.1128/aem.02272-07 · 2008 · External reference
Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization
10.1128/aem.57.8.2351-2359.1991 · 1991 · External reference
RecruitPlotEasy: an advanced read recruitment plot tool for assessing metagenomic population abundance and genetic diversity
10.3389/fbinf.2021.826701 · 2022 · External reference
Advances in understanding glycosyltransferases from a structural perspective
10.1016/j.sbi.2014.08.012 · 2014 · External reference
Hydrogen-dependent dissimilatory nitrate reduction to ammonium enables growth of Campylobacterota isolates
2025 · External reference
Unique core genomes of the bacterial family Vibrionaceae: insights into niche adaptation and speciation
10.1186/1471-2164-13-179 · 2012 · External reference
Deep sea actinomycetes and their secondary metabolites
10.3389/fmicb.2017.00760 · 2017 · External reference
Williamsia muralis gen. nov., sp. nov., isolated from the indoor environment of a children’s day care centre
10.1099/00207713-49-2-681 · 1999 · External reference
BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences
10.1016/j.jmb.2015.11.006 · 2016 · External reference
BLAT—the BLAST-like alignment tool
2002 · External reference
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp
10.1128/aem.68.2.772-783.2002 · 2002 · External reference
Genome-based reclassification of Williamsia marianensis as a later heterotypic synonym of Williamsia muralis
10.1099/ijsem.0.006485 · 2024 · External reference
Glycosyltransferases: structures, functions, and mechanisms
10.1146/annurev.biochem.76.061005.092322 · 2008 · External reference
Fast gapped-read alignment with bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
The sequence alignment/map format and SAMtools
10.1093/bioinformatics/btp352 · 2009 · External reference
A user’s guide to the bioinformatic analysis of shotgun metagenomic sequence data for bacterial pathogen detection
10.1016/j.ijfoodmicro.2023.110488 · 2024 · External reference
IPGA: a handy integrated prokaryote genome and pan-genome analysis web service
10.1002/imt2.55 · 2022 · External reference
Microbial diversity, community turnover, and putative functions in submarine canyon sediments under the action of sedimentary geology
10.1128/spectrum.04210-22 · 2023 · External reference
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
10.1186/2047-217x-1-18 · 2012 · External reference
Insights into the synthesis of lipopolysaccharide and antibiotics through the structures of two retaining glycosyltransferases from family GT4
10.1016/j.chembiol.2006.09.005 · 2006 · External reference
MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis
10.1093/bioinformatics/btx517 · 2017 · External reference
Genome sequence-based species delimitation with confidence intervals and improved distance functions
10.1186/1471-2105-14-60 · 2013 · External reference
TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes
10.1093/nar/gkab902 · 2022 · External reference
Structural diversity of carbohydrate esterases
10.1016/j.biori.2017.02.001 · 2017 · External reference
Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome
10.1186/s13059-015-0611-7 · 2015 · External reference
Impacts of deep-sea mining on microbial ecosystem services
10.1002/lno.11403 · 2020 · External reference
Roary: rapid large-scale prokaryote pan genome analysis
10.1093/bioinformatics/btv421 · 2015 · External reference
Williamsia marianensis sp. nov., a novel actinomycete isolated from the Mariana trench
10.1099/ijs.0.64132-0 · 2006 · External reference
Phyre2.2: a community resource for template-based protein structure prediction
10.1016/j.jmb.2025.168960 · 2025 · External reference
A new medium for the enumeration and subculture of bacteria from potable water
10.1128/aem.49.1.1-7.1985 · 1985 · External reference
Shifting the genomic gold standard for the prokaryotic species definition
10.1073/pnas.0906412106 · 2009 · External reference
Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
10.1099/ijsem.0.006300 · 2024 · External reference
The neighbor-joining method: a new method for reconstructing phylogenetic trees
1987 · External reference
Williamsia limnetica sp. nov., isolated from a limnetic lake sediment
10.1099/ijs.0.032474-0 · 2012 · External reference
Prokka: rapid prokaryotic genome annotation
10.1093/bioinformatics/btu153 · 2014 · External reference
Williamsia maris sp. nov., a novel actinomycete isolated from the sea of Japan
10.1099/ijs.0.02767-0 · 2004 · External reference
Defining the environmental adaptations of genus Devosia: insights into its expansive short peptide transport system and positively selected genes
10.1038/s41598-020-58163-8 · 2020 · External reference
MEGA11: molecular evolutionary genetics analysis version 11
10.1093/molbev/msab120 · 2021 · External reference
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial “pan-genome”
10.1073/pnas.0506758102 · 2005 · External reference
Antibiotics from deep-sea microorganisms: current discoveries and perspectives
10.3390/md16100355 · 2018 · External reference
Depth-dependent microbial metagenomes sampled in the northeastern Indian Ocean
10.1038/s41597-024-02939-4 · 2024 · External reference
Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
10.1099/00207713-37-4-463 · 1987 · External reference
Cetaceans and threats of the ninety east ridge and high seas of the Indian Ocean
10.1016/j.marenvres.2025.107290 · 2025 · External reference
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
10.1099/ijsem.0.001755 · 2017 · External reference
Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review
10.1007/s003740050533 · 1999 · External reference
US-align: universal structure alignments of proteins, nucleic acids, and macromolecular complexes
10.1038/s41592-022-01585-1 · 2022 · External reference
Mitochondrial genomic analyses provide new insights into the “missing” atp8 and adaptive evolution of Mytilidae
10.1186/s12864-022-08940-8 · 2022 · External reference
dbCAN3: automated carbohydrate-active enzyme and substrate annotation
10.1093/nar/gkad328 · 2023 · External reference