Research graph
References from Dysbiotic microbiomes and the collapse of plant health. Local targets link to admitted publications; unresolved targets remain external evidence.
A plant genetic network for preventing dysbiosis in the phyllosphere
10.1038/s41586-020-2185-0 · 2020 · External reference
Plant microbiota dysbiosis and the Anna Karenina Principle
10.1016/j.tplants.2022.08.012 · 2023 · External reference
Dysbiosis and its discontents
10.1128/mbio.01492-17 · 2017 · External reference
A complete guide to human microbiomes: body niches, transmission, development, dysbiosis, and restoration
10.3389/fsysb.2022.951403 · 2022 · External reference
Diversity alone does not reliably indicate the healthiness of an animal microbiome
10.1093/ismejo/wrae133 · 2024 · External reference
Gut dysbiosis: ecological causes and causative effects on human disease
10.1073/pnas.2316579120 · 2023 · External reference
Gut microbiota dysbiosis: pathogenesis, diseases, prevention, and therapy
2025 · External reference
Microbiome definition re-visited: old concepts and new challenges
10.1186/s40168-020-00875-0 · 2020 · External reference
Host-mediated rhizosphere microbiome transfer suppresses Fusarium oxysporum in banana
10.1111/nph.71071 · 2026 · External reference
Patching the leak or rebuilding the boat? Evaluating targeted probiotic cyanobacteria and microbiome transplants to counteract antibiotic-driven rhizosphere dysbiosis in tomato under Xanthomonas perforans pressure
2026 · External reference
The underground world of plant disease: rhizosphere dysbiosis reduces above-ground plant resistance to bacterial leaf spot and alters plant transcriptome
10.1111/1462-2920.16676 · 2024 · External reference
Rice roots recruit Bacillus via the secretion of heptadecanoic acid
10.1038/s41477-026-02268-x · 2026 · External reference
Influence of plant genotype and soil on the cotton rhizosphere microbiome
2022 · External reference
Dissection of rhizosphere microbiome and exploiting strategies for sustainable agriculture
10.1111/nph.19697 · 2024 · External reference
The role of plant host genetics in shaping the composition and functionality of rhizosphere microbiomes
2025 · External reference
The distinguished microbiome: differentiating microbial dysbiosis and the pathobiome of banana Fusarium tropical race 4
10.1094/pbiomes-10-24-0097-r · 2025 · External reference
Leaf microbiome dysbiosis triggered by T2SS-dependent enzyme secretion from opportunistic Xanthomonas pathogens
10.1038/s41564-023-01555-z · 2024 · External reference
The extended plant immune system
10.1094/mpmi-10-25-0144-hh · 2025 · External reference
Predator-driven microbial feedback loops promote plant health
10.1038/s41467-026-70413-3 · 2026 · External reference
Phages indirectly maintain tomato plant pathogen defense through regulation of the commensal microbiome
10.1093/ismeco/ycaf065 · 2025 · External reference
Obligate biotroph downy mildew consistently induces near-identical protective microbiomes in Arabidopsis thaliana
10.1038/s41564-023-01502-y · 2023 · External reference
A preliminary examination of the bacterial, archaeal, and fungal rhizosphere microbiome in healthy and Phellinus noxius-infected trees
10.1002/mbo3.1115 · 2020 · External reference
Abiotic treatment to common bean plants results in an altered endophytic seed microbiome
10.1128/spectrum.00210-21 · 2022 · External reference
Seed-to-seed: plant core vertically transmitted microbiota
10.1021/acs.jafc.3c07092 · 2023 · External reference
A critical role of a eubiotic microbiota in gating proper immunocompetence in Arabidopsis
10.1038/s41477-023-01501-1 · 2023 · External reference
Plant exudates-driven microbiome recruitment and assembly facilitates plant health management
10.1093/femsre/fuaf008 · 2025 · External reference
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
10.1126/science.aaw9285 · 2019 · External reference
Downy mildew disease-suppressive soils transmit a protective core microbiome to the phyllosphere
10.1093/ismejo/wrag016 · 2026 · External reference
Seed tuber microbiome can predict growth potential of potato varieties
10.1038/s41564-024-01872-x · 2025 · External reference
Plant-driven assembly of disease-suppressive soil microbiomes
10.1146/annurev-phyto-021622-100127 · 2024 · External reference
Quantitative microbiome profiling links gut community variation to microbial load
10.1038/nature24460 · 2017 · External reference
Absolute quantitation of microbiota abundance in environmental samples
10.1186/s40168-018-0491-7 · 2018 · External reference
Method for early diagnosis of verticillium wilt in cotton based on chlorophyll fluorescence and hyperspectral technology
10.1016/j.compag.2023.108497 · 2024 · External reference
Stress and stability: applying the Anna Karenina principle to animal microbiomes
10.1038/nmicrobiol.2017.121 · 2017 · External reference
Plant-microbiome interactions: from community assembly to plant health
10.1038/s41579-020-0412-1 · 2020 · External reference
Maize leaf endosphere microbiome was affected by domestication and shows patterns consistent with microbial dysbiosis
10.3389/frmbi.2026.1735358 · 2026 · External reference
A general framework for quantitatively assessing ecological stochasticity
10.1073/pnas.1904623116 · 2019 · External reference
Stochastic and deterministic assembly processes in subsurface microbial communities
10.1038/ismej.2012.22 · 2012 · External reference
Crying out for help with root exudates: adaptive mechanisms by which stressed plants assemble health-promoting soil microbiomes
10.1016/j.mib.2019.10.003 · 2019 · External reference
Revisiting the cry-for-help hypothesis in plant–microbe interactions
10.1016/j.tplants.2025.07.015 · 2026 · External reference
Soil characteristics and land-use drive bacterial community assembly patterns
10.1093/femsec/fiz194 · 2020 · External reference
Functional redundancy in soil microbial community based on metagenomics across the globe
2022 · External reference
Keystone Pseudomonas species in the wheat phyllosphere microbiome mitigate Fusarium head blight by altering host pH
10.1016/j.chom.2025.10.016 · 2025 · External reference
Utilizing dual-channel graph and hypergraph convolution network to discover microbes underlying disease traits
10.1021/acs.jcim.5c00224 · 2025 · External reference
Paradigms for microbiome analysis in infectious and non-communicable diseases
10.1016/j.tim.2025.11.016 · 2026 · External reference
Let the core microbiota be functional
10.1016/j.tplants.2017.04.008 · 2017 · External reference
Deciphering functional redundancy in the human microbiome
10.1038/s41467-020-19940-1 · 2020 · External reference
Soybean productivity can be enhanced by understanding rhizosphere microbiota: evidence from metagenomics analysis from diverse agroecosystems
10.1186/s40168-025-02104-y · 2025 · External reference
Metagenomic insights into disease-induced microbial dysbiosis and elemental cycling alterations in Morchella cultivation soils: evidence from two distinct regions
10.3390/jof11090663 · 2025 · External reference
Coming of age for microbiome gene breeding in plants
10.1038/s41467-024-50700-7 · 2024 · External reference
Disease resistance through M genes
10.1038/s41477-024-01644-9 · 2024 · External reference
Microbiome homeostasis on rice leaves is regulated by a precursor molecule of lignin biosynthesis
10.1038/s41467-023-44335-3 · 2024 · External reference
Host metabolites explain microbiome variation between different rice genotypes
10.1186/s40168-025-02181-z · 2025 · External reference
Born to rewild: reconnecting beneficial plant-microbiome alliances for resilient future crops
10.1016/j.chom.2025.06.017 · 2025 · External reference
The use of synthetic microbial communities to improve plant health
10.1094/phyto-01-23-0016-ia · 2023 · External reference
Phenazines contribute to microbiome dynamics by targeting topoisomerase IV
10.1038/s41564-025-02118-0 · 2025 · External reference
From “synthetic” to defined microbial communities for clearer terminology
10.1038/s41467-026-74251-1 · 2026 · External reference
Temporal metabolite responsiveness of microbiota in the tea plant phyllosphere promotes continuous suppression of fungal pathogens
10.1016/j.jare.2021.10.003 · 2022 · External reference
Multi-omics insights into plant-microbe dysbiosis caused by cyanobacterial bloom-affected water
2025 · External reference
Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice
10.1371/journal.pbio.2003862 · 2018 · External reference
Integrating ecological and evolutionary frameworks for SynCom success
10.1111/nph.70112 · 2025 · External reference
Engineering plant holobionts for climate-resilient agriculture
10.1093/ismejo/wraf158 · 2025 · External reference
Streptomyces enrichment in roots during drought is uncoupled from plant benefit and is driven by host suppression of iron uptake and immunity
10.1016/j.cell.2026.04.027 · 2026 · External reference
Underground guardians: how collagen and chitin amendments shape soil microbiome structure and function for Meloidogyne enterolobii control
10.1186/s40168-025-02132-8 · 2025 · External reference
Induced systemic resistance by beneficial microbes
10.1146/annurev-phyto-082712-102340 · 2014 · External reference
Precipitation legacy effects on soil microbiota facilitate adaptive drought responses in plants
10.1038/s41564-025-02148-8 · 2025 · External reference
Rhizosphere legacy of leaf-diseased rice and its impact on next generation
10.3389/fmicb.2025.1677271 · 2025 · External reference
The soil-borne legacy
10.1016/j.cell.2018.02.024 · 2018 · External reference
Hyperspectral imaging for the detection of plant pathogens in seeds: recent developments and challenges
10.3389/fpls.2024.1387925 · 2024 · External reference
