Research graph
References from Culture-enriched metagenomics enables genome-resolved detection of low abundance ESKAPE and Vibrio pathogens in coastal habitats. Local targets link to admitted publications; unresolved targets remain external evidence.
Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater
10.1128/spectrum.02918-23 · 2024 · External reference
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First report from colombia of a urinary tract infection caused by Kluyvera Ascorbata exhibiting an AmpC resistance pattern: a case report
10.3390/diseases13070194 · 2025 · External reference
A comprehensive list of bacterial pathogens infecting humans
10.1099/mic.0.001269 · 2022 · External reference
Evidence for wastewaters as environments where mobile antibiotic resistance genes emerge
10.1038/s42003-023-04676-7 · 2023 · External reference
Correlation between phenotypic and in silico detection of antimicrobial resistance in salmonella enterica in Canada using Staramr
10.3390/microorganisms10020292 · 2022 · External reference
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
10.1038/s41587-023-01688-w · 2023 · External reference
Environmental factors influencing occurrence of vibrio parahaemolyticus and vibrio vulnificus
10.1128/aem.00307-23 · 2023 · External reference
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GTDB-Tk v2: memory friendly classification with the genome taxonomy database
10.1093/bioinformatics/btac672 · 2022 · External reference
Seasonal microbial dynamics in the ocean inferred from assembled and unassembled data: a view on the unknown biosphere
10.1038/s43705-022-00167-8 · 2022 · External reference
The importance of using whole genome sequencing and extended spectrum beta-lactamase selective media when monitoring antimicrobial resistance
10.1038/s41598-020-76877-7 · 2020 · External reference
Strain-level characterization of broad host range mobile genetic elements transferring antibiotic resistance from the human microbiome
10.1038/s41467-022-29096-9 · 2022 · External reference
A novel culture-enriched metagenomic sequencing strategy effectively guarantee the microbial safety of drinking water by uncovering the low abundance pathogens
10.1016/j.jenvman.2023.118737 · 2023 · External reference
Insights into Carbapenem resistance in vibrio species: current status and future perspectives
10.3390/ijms232012486 · 2022 · External reference
Occurrence and distribution of bacteria indicators, chemical tracers and pathogenic vibrios in Singapore coastal waters
10.1016/j.marpolbul.2016.09.036 · 2017 · External reference
Assessing the additional health burden of antibiotic resistant Enterobacteriaceae in surface waters through an integrated QMRA and DALY approach
10.1016/j.jhazmat.2023.132058 · 2023 · External reference
A multi-pronged approach to assessing antimicrobial resistance risks in coastal waters and aquaculture systems
10.1016/j.watres.2024.122353 · 2024 · External reference
Current knowledge and perspectives of Paenibacillus: a review
10.1186/s12934-016-0603-7 · 2016 · External reference
The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples
10.1186/s40793-019-0347-1 · 2019 · External reference
The conjugation window in an escherichia coli K-12 Strain with an IncFII Plasmid
10.1128/aem.00948-20 · 2020 · External reference
Metagenome-assembled genomes (MAGs) of the emerging pathogen Shewanella algae from enrichment of coastal seawater, sediment, and algae at St. John's Island, Singapore
10.1128/mra.00846-24 · 2025 · External reference
Multidrug-resistant bacteria and microbial communities in a river estuary with fragmented suburban waste management
10.1016/j.jhazmat.2020.124687 · 2021 · External reference
Discovery of a phylogenetically novel tropical marine Gammaproteobacteria elucidated from assembled genomes and the proposed transfer of the genus Umboniibacter from the family Cellvibrionaceae to Umboniibacteraceae fam. nov
10.3389/fmicb.2025.1437936 · 2025 · External reference
Detection, isolation, and identification of Vibrio cholerae from the environment
10.1002/9780471729259.mc06a05s26 · 2012 · External reference
Quasi-metagenomic Analysis of Salmonella from Food and Environmental Samples
10.3791/58612 · 2018 · External reference
Shewanella algae relatives capable of generating electricity from acetate contribute to coastal-sediment microbial fuel cells treating complex organic matter
10.1264/jsme2.me19161 · 2020 · External reference
Kytococcus species infections in humans—a narrative review
10.3390/microorganisms13051072 · 2025 · External reference
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Relationships between environmental factors and pathogenic Vibrios in the Northern Gulf of Mexico
10.1128/aem.00697-10 · 2010 · External reference
Prevalence and pathogenic potential of Shewanella species in oysters and seawater collected from the Chesapeake Bay and Maryland Coastal Bays
10.3389/fmicb.2025.1502443 · 2025 · External reference
Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens
10.1099/ijs.0.060145-0 · 2014 · External reference
Application of quasimetagenomics methods to define microbial diversity and subtype Listeria monocytogenes in dairy and seafood production facilities
10.1128/spectrum.01482-23 · 2023 · External reference
Antibiotic resistance-the need for global solutions
10.1016/s1473-3099(13)70318-9 · 2013 · External reference
Distribution of pathogenic vibrio species in the coastal seawater of South Korea (2017-2018)
10.24171/j.phrp.2019.10.6.03 · 2019 · External reference
Enterococcus raffinosus bacteremia: clinical experience with 49 adult patients
10.1007/s10096-021-04389-x · 2022 · External reference
Is it safe to go back into the water? A systematic review and meta-analysis of the risk of acquiring infections from recreational exposure to seawater
10.1093/ije/dyx281 · 2018 · External reference
Human recreational exposure to antibiotic resistant bacteria in coastal bathing waters
10.1016/j.envint.2015.02.013 · 2015 · External reference
Exposure to and colonisation by antibiotic-resistant E. coli in UK coastal water users: environmental surveillance, exposure assessment, and epidemiological study (Beach Bum Survey)
10.1016/j.envint.2017.11.003 · 2018 · External reference
Capturing the microbial dark matter in desert soils using culturomics-based metagenomics and high-resolution analysis
10.1038/s41522-023-00439-8 · 2023 · External reference
PCR detection of Klebsiella pneumoniae in infant formula based on 16S-23S internal transcribed spacer
10.1016/j.ijfoodmicro.2008.03.005 · 2008 · External reference
Tenacibaculosis caused by Tenacibaculum maritimum: Updated knowledge of this marine bacterial fish pathogen
2022 · External reference
Citrobacter werkmanii, a new candidate for the production of 1,3-propanediol: strain selection and carbon source optimization
10.1039/c2gc35369e · 2012 · External reference
Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa
10.3389/fmicb.2023.1037845 · 2023 · External reference
Growth and laboratory maintenance of Staphylococcus aureus
10.1002/9780471729259.mc09c01s28 · 2013 · External reference
Insights into the microbiome of farmed Asian sea bass (Lates calcarifer) with symptoms of tenacibaculosis and description of Tenacibaculum singaporense sp. nov
10.1007/s10482-020-01391-9 · 2020 · External reference
Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis
10.1016/s0140-6736(21)02724-0 · 2022 · External reference
Non-cholera Vibrio infections in Southeast Asia: a systematic review and meta-analysis
10.1016/j.jiph.2024.102564 · 2024 · External reference
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10.64898/2026.03.03.709458
10.64898/2026.03.03.709458 · External reference
metaSPAdes: a new versatile metagenomic assembler
10.1101/gr.213959.116 · 2017 · External reference
The potential human exposure to antibiotic resistant-Escherichia coli through recreational water
10.1016/j.scitotenv.2018.09.018 · 2019 · External reference
Biodegradation of certain polycyclic hydrocarbons with paenbacillus alvei and penicillum restricum
10.12911/22998993/81808 · 2018 · External reference
Antimicrobial resistance risk assessment of vibrio parahaemolyticus isolated from farmed green mussels in Singapore
10.3390/microorganisms11061498 · 2023 · External reference
Advancing antimicrobial resistance monitoring in surface waters with metagenomic and quasimetagenomic methods
10.1371/journal.pwat.0000067 · 2022 · External reference
Quasimetagenomic source tracking of Listeria monocytogenes from naturally contaminated ice cream
10.1186/s12879-019-4747-z · 2020 · External reference
Roary: rapid large-scale prokaryote pan genome analysis
10.1093/bioinformatics/btv421 · 2015 · External reference
Pantoea dispersa: is it the next emerging "monster" in our intensive care units? A case report and review of literature
10.4103/aer.aer_147_18 · 2018 · External reference
Mobile genetic elements associated with antimicrobial resistance
10.1128/cmr.00088-17 · 2018 · External reference
Dietzia species pacemaker pocket infection: an unusual organism in human infections
10.1136/bcr.10.2011.5011 · 2012 · External reference
Aeromonas and human health disorders: clinical approaches
10.3389/fmicb.2022.868890 · 2022 · External reference
Advancing pathogen genomics in resource-limited settings
2023 · External reference
Kluyvera ascorbata: an emerging pathogen and rare cause of urinary tract infection in immunocompetent patients at a tertiary care center in North India
10.4103/amhs.amhs_296_23 · 2024 · External reference
Culture-enriched human gut microbiomes reveal core and accessory resistance genes
10.1186/s40168-019-0669-7 · 2019 · External reference
Federal funding for the study of antimicrobial resistance in nosocomial pathogens: no ESKAPE
10.1086/533452 · 2008 · External reference
Survival strategies of bacteria in the natural environment
10.1128/mr.51.3.365-379.1987 · 1987 · External reference
Fate of extended-spectrum β-lactamase-producing Escherichia coli from Faecal sources in surface water and probability of human exposure through swimming
10.1021/acs.est.5b01888 · 2015 · External reference
PCR inhibitors – occurrence, properties and removal
10.1111/j.1365-2672.2012.05384.x · 2012 · External reference
Prokka: rapid prokaryotic genome annotation
10.1093/bioinformatics/btu153 · 2014 · External reference
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Influence of multilayer sea sand and Shewanella algae on the corrosion behavior of 316 SS
10.1038/s41529-025-00575-w · 2025 · External reference
Outbreak of carbapenem resistant Klebsiella pneumoniae in a neurorehabilitation unit: genomic epidemiology reveals complex transmission pattern in a tertiary care hospital
10.1016/j.jgar.2025.01.001 · 2025 · External reference
Complete genome sequence of Kytococcus sedentarius type strain (541)
10.4056/sigs.761 · 2009 · External reference
The urban marine environment of Singapore
2016 · External reference
Spatial and temporal changes in gut microbiota composition of farmed Asian seabass Lates calcarifer in different aquaculture settings
10.1128/spectrum.01989-24 · 2025 · External reference
High-quality metagenomic DNA from marine sediment samples for genomic studies through a preprocessing approach
10.1007/s13205-016-0482-y · 2016 · External reference
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
10.1093/bioinformatics/btu033 · 2014 · External reference
Identification of metagenome-assembled genomes containing antimicrobial resistance genes, isolated from an advanced water treatment facility
10.1128/mra.00003-20 · 2020 · External reference
Vibrio parahaemolyticus: a concern of seafood safety
10.1016/j.fm.2007.01.005 · 2007 · External reference
Dietzia maris bacteremia: use of molecular techniques for accurate identification of actinomycetes
10.1016/j.clinmicnews.2007.09.002 · 2007 · External reference
A quasimetagenomics method for concerted detection and subtyping of Salmonella enterica and E. coli O157:H7 from romaine lettuce
10.1016/j.fm.2020.103575 · 2020 · External reference
The pathogenicity of shewanella algae and ability to tolerate a wide range of temperatures and salinities
10.1155/2018/6976897 · 2018 · External reference
Novel ecological niche of Cetobacterium somerae, an anaerobic bacterium in the intestinal tracts of freshwater fish
2008 · External reference
MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
10.1186/s40168-018-0541-1 · 2018 · External reference
Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov
10.1099/00207713-49-2-705 · 1999 · External reference
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Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota
10.1038/s41564-019-0643-y · 2020 · External reference
Vancomycin-resistant Enterococcus raffinosus: Molecular epidemiology, species identification error, and frequency of occurrence in a national resistance surveillance program
10.1016/s0732-8893(97)00059-x · 1997 · External reference
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Integrating metagenomics and culturomics to uncover the soil bacterial community in Asparagus cochinchinensis cultivation
10.3389/fmicb.2024.1467864 · 2024 · External reference
Genetic traits and transmission of antimicrobial resistance characteristics of cephalosporin resistant Escherichia coli in tropical aquatic environments
10.1016/j.jhazmat.2024.135707 · 2024 · External reference
Evaluation of public health impact risks associated with bacterial antimicrobial resistome in tropical coastal environments
10.1016/j.watres.2025.123621 · 2025 · External reference
Impact of sequencing depth on the characterization of the microbiome and resistome
10.1038/s41598-018-24280-8 · 2018 · External reference
Using culture-enriched phenotypic metagenomics for targeted high-throughput monitoring of the clinically important fraction of the β-lactam resistome
10.1021/acs.est.2c03627 · 2022 · External reference
